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The map label for this gene is cydA [H]

Identifier: 86747331

GI number: 86747331

Start: 230630

End: 232027

Strand: Direct

Name: cydA [H]

Synonym: RPB_0205

Alternate gene names: 86747331

Gene position: 230630-232027 (Clockwise)

Preceding gene: 86747330

Following gene: 86747332

Centisome position: 4.33

GC content: 63.81

Gene sequence:

>1398_bases
ATGGACCAGCTCCTTCTCTCCCGGCTGCAGTTCGCCTTCACGATTGGCTATCACATTCTGTGGCCGGCCTTCACCATCGG
CATCGCCTGGTTCATCGTGGTGCTGAGCGCGCTGTGGTTGCGCACCCACGATCCGGTGTATCGACACCTAGTGCGGTTCT
GGACCAAGGTGTTCGCGCTCGCTTTCGGCATGGGCGTGGTCACCGGCGTGGTGATTTCGTATCAGCTCGGGCTGAACTGG
TCCGGCTATGCGCGGGCGACCGCGGACGTCATCGGTCCGTTGTTCGTGCTGGAGGTTCTCACGGCGTTCTTCCTCGAAGC
CGGCTTCATCGGCGTCATGCTGTATGGCGAACAGAAGGTCGGCGAGAAGCTGCATTTCACCGCCTGCCTGATCGTTGCGA
TCGGCACGGTGATTTCCGCGTTCTGGATCATCTCGGCGAATTCCTGGATGCAGACGCCGACAGCTTTCACCACCACGGCC
GATGGCCGCTTCGTGGCCACGGATTTCTGGGGCGTGGTGTTCAACCCGTCGATGCCGTATCGGCTGGCGCATATGCTGAC
GGCCAGTTTCATCACCGGCGGCTTCGTGGTGGTGGGCGTGTCGGCGTTCTGGATCTGGCGCGGCCGTCCCGCGGATCAGC
CGGCGGCCCGCAAGGCATTCTCGATTTGCCTCGGATTGATGGCGGTGCTGGTCCCGGCGCAAATGCTGATCGGCGACCAG
CATGGATTGAATACGCGCAAATATCAGCCGATGAAGCTGGCCGCGATCGAGGCGCGCTGGGATACGGCGCGGGGGGTCCC
GATCAATGTCATCGCCTGGCCCGACGAGAAGAACGAACGCAACGACTATGCGCTCGAGATTCCCATCCTGGGCAGCCTGA
TCCTGACGCATTCGCTCGACGGTGAAGTCAAGGGTCTGAAGGAAGTGCCGGCTTCGGAGCGGCCACCCGTGGCGCCGGTG
TTCTTCGCTTTCCGGATCATGGTCGGTTGCGGCCTGCTGCTGCTCTTGGTCGCGTTCGCCGGTCTGTATCTGCGCTGGCG
CGGGCGACTCTACACCGCGCGCTGGTATCAAGTCGTCTGCATGGGGTGCATTCCGCTCGGCTTCATCGCGACGCTGGCGG
GCTGGGTGGTGACGGAAGTCGGGCGGCAGCCTTATGTGATCTACGGACATTTCCGCACCTCCGAAGCGGTGTCGCCGATC
GCCGGCGGCGCCGTTGCCAGTTCGCTCGCGGTGGCTCTGGTGCTCTACAACCTGCTGCTGCTCGGTTTCTTCTGGTATGC
GGGCCGGTTGGCCTTGCGCGGCCCGATGAGCGGCGTCCCCACCCATCCCGCCGTGCCGATGGCGACCGTCGCGGCCGCGC
TCGGACAGGGTTCTCGAACCACCGAAGGTGCACGATGA

Upstream 100 bases:

>100_bases
CGCGGTGGGGCGTGACGGAATCGTCGGCCGCGAACCGGGCGTCGAGACCGCAACGGGGCCGTCGCCCGTCTCCCTCATCG
ATTGAACGACAGGATCACAG

Downstream 100 bases:

>100_bases
GCATGCTGTCAGGCTTTGATTTTGCGGTGTTCTTCGCCGTCGGCGCGGCTGTCGTGATCGGCCTCTACGTCGTGCTCGAC
GGCGTCGATCTCGGCGTCGG

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MDQLLLSRLQFAFTIGYHILWPAFTIGIAWFIVVLSALWLRTHDPVYRHLVRFWTKVFALAFGMGVVTGVVISYQLGLNW
SGYARATADVIGPLFVLEVLTAFFLEAGFIGVMLYGEQKVGEKLHFTACLIVAIGTVISAFWIISANSWMQTPTAFTTTA
DGRFVATDFWGVVFNPSMPYRLAHMLTASFITGGFVVVGVSAFWIWRGRPADQPAARKAFSICLGLMAVLVPAQMLIGDQ
HGLNTRKYQPMKLAAIEARWDTARGVPINVIAWPDEKNERNDYALEIPILGSLILTHSLDGEVKGLKEVPASERPPVAPV
FFAFRIMVGCGLLLLLVAFAGLYLRWRGRLYTARWYQVVCMGCIPLGFIATLAGWVVTEVGRQPYVIYGHFRTSEAVSPI
AGGAVASSLAVALVLYNLLLLGFFWYAGRLALRGPMSGVPTHPAVPMATVAAALGQGSRTTEGAR

Sequences:

>Translated_465_residues
MDQLLLSRLQFAFTIGYHILWPAFTIGIAWFIVVLSALWLRTHDPVYRHLVRFWTKVFALAFGMGVVTGVVISYQLGLNW
SGYARATADVIGPLFVLEVLTAFFLEAGFIGVMLYGEQKVGEKLHFTACLIVAIGTVISAFWIISANSWMQTPTAFTTTA
DGRFVATDFWGVVFNPSMPYRLAHMLTASFITGGFVVVGVSAFWIWRGRPADQPAARKAFSICLGLMAVLVPAQMLIGDQ
HGLNTRKYQPMKLAAIEARWDTARGVPINVIAWPDEKNERNDYALEIPILGSLILTHSLDGEVKGLKEVPASERPPVAPV
FFAFRIMVGCGLLLLLVAFAGLYLRWRGRLYTARWYQVVCMGCIPLGFIATLAGWVVTEVGRQPYVIYGHFRTSEAVSPI
AGGAVASSLAVALVLYNLLLLGFFWYAGRLALRGPMSGVPTHPAVPMATVAAALGQGSRTTEGAR
>Mature_465_residues
MDQLLLSRLQFAFTIGYHILWPAFTIGIAWFIVVLSALWLRTHDPVYRHLVRFWTKVFALAFGMGVVTGVVISYQLGLNW
SGYARATADVIGPLFVLEVLTAFFLEAGFIGVMLYGEQKVGEKLHFTACLIVAIGTVISAFWIISANSWMQTPTAFTTTA
DGRFVATDFWGVVFNPSMPYRLAHMLTASFITGGFVVVGVSAFWIWRGRPADQPAARKAFSICLGLMAVLVPAQMLIGDQ
HGLNTRKYQPMKLAAIEARWDTARGVPINVIAWPDEKNERNDYALEIPILGSLILTHSLDGEVKGLKEVPASERPPVAPV
FFAFRIMVGCGLLLLLVAFAGLYLRWRGRLYTARWYQVVCMGCIPLGFIATLAGWVVTEVGRQPYVIYGHFRTSEAVSPI
AGGAVASSLAVALVLYNLLLLGFFWYAGRLALRGPMSGVPTHPAVPMATVAAALGQGSRTTEGAR

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=515, Percent_Identity=31.4563106796116, Blast_Score=231, Evalue=5e-62,
Organism=Escherichia coli, GI87081779, Length=532, Percent_Identity=29.5112781954887, Blast_Score=226, Evalue=3e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 50957; Mature: 50957

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLLLSRLQFAFTIGYHILWPAFTIGIAWFIVVLSALWLRTHDPVYRHLVRFWTKVFAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AFGMGVVTGVVISYQLGLNWSGYARATADVIGPLFVLEVLTAFFLEAGFIGVMLYGEQKV
HHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
GEKLHFTACLIVAIGTVISAFWIISANSWMQTPTAFTTTADGRFVATDFWGVVFNPSMPY
CCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEECCCCCEEEEEECEEEECCCCCH
RLAHMLTASFITGGFVVVGVSAFWIWRGRPADQPAARKAFSICLGLMAVLVPAQMLIGDQ
HHHHHHHHHHHHCCHHEEEHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
HGLNTRKYQPMKLAAIEARWDTARGVPINVIAWPDEKNERNDYALEIPILGSLILTHSLD
CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCC
GEVKGLKEVPASERPPVAPVFFAFRIMVGCGLLLLLVAFAGLYLRWRGRLYTARWYQVVC
CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHH
MGCIPLGFIATLAGWVVTEVGRQPYVIYGHFRTSEAVSPIAGGAVASSLAVALVLYNLLL
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LGFFWYAGRLALRGPMSGVPTHPAVPMATVAAALGQGSRTTEGAR
HHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MDQLLLSRLQFAFTIGYHILWPAFTIGIAWFIVVLSALWLRTHDPVYRHLVRFWTKVFAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AFGMGVVTGVVISYQLGLNWSGYARATADVIGPLFVLEVLTAFFLEAGFIGVMLYGEQKV
HHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
GEKLHFTACLIVAIGTVISAFWIISANSWMQTPTAFTTTADGRFVATDFWGVVFNPSMPY
CCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEECCCCCEEEEEECEEEECCCCCH
RLAHMLTASFITGGFVVVGVSAFWIWRGRPADQPAARKAFSICLGLMAVLVPAQMLIGDQ
HHHHHHHHHHHHCCHHEEEHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
HGLNTRKYQPMKLAAIEARWDTARGVPINVIAWPDEKNERNDYALEIPILGSLILTHSLD
CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCC
GEVKGLKEVPASERPPVAPVFFAFRIMVGCGLLLLLVAFAGLYLRWRGRLYTARWYQVVC
CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHH
MGCIPLGFIATLAGWVVTEVGRQPYVIYGHFRTSEAVSPIAGGAVASSLAVALVLYNLLL
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LGFFWYAGRLALRGPMSGVPTHPAVPMATVAAALGQGSRTTEGAR
HHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]