| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86747315
Identifier: 86747315
GI number: 86747315
Start: 208007
End: 209626
Strand: Direct
Name: 86747315
Synonym: RPB_0189
Alternate gene names: NA
Gene position: 208007-209626 (Clockwise)
Preceding gene: 86747311
Following gene: 86747316
Centisome position: 3.9
GC content: 66.36
Gene sequence:
>1620_bases ATGACGAATGTCGAACGCGATCCCCCGATGACGGCCGAAACACGGGCGTCCCCCTGGATCGCGTTCCGCCACACCGCCTT TACGGTGGTCTGGACCGCAACCGTCGTCGCCAACGTCGGCACCTGGATGTACAACGCGGCATCCGGCTGGCTGATGACGA GCCTGGAAGCCGATCCACTGACCGTTTCGCTCGTTCAAGTCGCGTCCAGCCTTCCGATGTTCCTGTTCGCGATCCCGGCC GGCGCGCTGGCGGACATCGTCGACAAGCGGCGCTTCCTGATCCTGATCGAGATCGTGCTCACCGTGTTTGCGGCCGCGAG CGCGGTGCTGGTCTGGCTCGGGCTGATGAACCCGTTCCAGCTGTTGCTGTTCACGTTTCTGCTCGGCGCGGGTGCGGCGT TCGCGGCGCCGGCCTGGCAATCGATCGTGCCGGATCTCGTGCCCAAGGAGCACCTCGCATCGGCGGTGGCGAGCAATGGC GTCGGCATCAATGTCAGCCGGGCGATCGGCCCGGCGCTGGGCGGCGTGGTGATCGGCGTCGCGGGCATCGCGGCGCCGTT CTGGATCAACGCGCTGAGCAATTTCGCGGTGATCGGCGCGCTGCTGTGGTGGCGCCCCGCCGCCAAGCGCGCGGCGACGC TGCCTCCGGAACGGTTGTTCAGCGCGATCGTGATCGGCTTTCGCCACGCGCGATACAATCTCGATCTGCGCGCCACACTG GTGCGCGCGGTCGCGTTCTTCTTTTTCGCCAGCGCGTATTGGGCGCTGCTGCCGCTTGTCGCCCGCTCGCGCATCGCCGG GGGACCGGAACTGTACGGCATTTTGCTCGGCGCAATCGGCCTCGGCGCGATTGTCGGCGCGTTCCTGTTGCAGGGGTTGA AATCGGCGCTGGGGCCGGATCGCTTGGTCGCGGCCGGCACGCTCGGGACAGCGGTCAGCCTCGTTCTGCTCGGCAGCGTC CAACGCGTCGAACTCGCGACCGCGGCCTGTTTCATCGCGGGCGTTTCGTGGATCGCGGTTCTCGCCAACCTCAACGTTTC CGTTCAGGTCGCGCTACCGGACTGGGTGCGCGGCCGCGGCCTGGCGATGTTCGTCACGGTGTTCTTCGGCGCGATGACGG CCGGCAGCGCGCTCTGGGGTCAGTTGGCGTCGTCGTTCGGATTGCCGGCAGCGCATTTCGCCGCGGCCGTCGGCGCCGTC GTCGGCATCGCCGTGACGTGGCGCTGGAAACTGCGCGGCAGCGCCGAGCACGATCTCGCACCCTCGATGCATTGGCCCGC GCCGGTGCTGGCCATCGATGCCGATGCCGATCAAGGCCCGGTGCTGATTACGGTCGAGTACCATGTCGCAGCGGACAGGC GCGACGCCTTCCTGCTGGCTATGCGAAAATTGAGCCGACAGCGACGGCGTGACGGCGCATATGCGTGGGACGTGTTCGAA GATACCTCGGAGCGCGGACGATTCGTCGAGGTGTTCAAAGTTGCGTCATGGCTCGAGCATCTTCGGCAACATGATCGCGT CACCAATGCGGATCGGATCGATCAGAATGCGATCCGCCATTTCCACGCGAGCGCAGAGCCTCGCGTGACGCACTTGCTCG CTGCGAAGTTCCCGGCATGA
Upstream 100 bases:
>100_bases ACCCTGCAATCCCCGCCGCCCCCGCCCGGATAGTCTGTCTCGGATCCGTCTCCGTCGCGCCGGATACCCCGTCTCGCTCA TCCAACCGATCGAGGACCAG
Downstream 100 bases:
>100_bases CTCCGGGCAAGCTGCGCGCGCCGTGACCGCCGCTCAAACCCGACCTCGGCCGGCCGATCGAGGCGCGTCTCGAGCCCGAG CGGCTTGTGGAGGCCGGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: MFS Permease; Facilitator Superfamily Protein; MFS Family Transporter; MFS Transporter; Facilitator Superfamily; Integral Membrane Efflux Protein; Transport Transmembrane Protein; Facilitator Superfamily Permease; Permeases Of Facilitator Superfamily; Permease; Mfs Transporter; Transporter Facilitator Family; Facilitator Superfamily Transmembrane Transporter; Facilitator Superfamily Transporter; Transmembrane Efflux Protein; Multidrug ABC Transporter; ABC Transporter Permease Protein; Facilitator Transpoter; Macrolide-Efflux Protein; Permease Of Facilitator Superfamily; Dioxygenase; MFS Family Diterpenoid Transporter
Number of amino acids: Translated: 539; Mature: 538
Protein sequence:
>539_residues MTNVERDPPMTAETRASPWIAFRHTAFTVVWTATVVANVGTWMYNAASGWLMTSLEADPLTVSLVQVASSLPMFLFAIPA GALADIVDKRRFLILIEIVLTVFAAASAVLVWLGLMNPFQLLLFTFLLGAGAAFAAPAWQSIVPDLVPKEHLASAVASNG VGINVSRAIGPALGGVVIGVAGIAAPFWINALSNFAVIGALLWWRPAAKRAATLPPERLFSAIVIGFRHARYNLDLRATL VRAVAFFFFASAYWALLPLVARSRIAGGPELYGILLGAIGLGAIVGAFLLQGLKSALGPDRLVAAGTLGTAVSLVLLGSV QRVELATAACFIAGVSWIAVLANLNVSVQVALPDWVRGRGLAMFVTVFFGAMTAGSALWGQLASSFGLPAAHFAAAVGAV VGIAVTWRWKLRGSAEHDLAPSMHWPAPVLAIDADADQGPVLITVEYHVAADRRDAFLLAMRKLSRQRRRDGAYAWDVFE DTSERGRFVEVFKVASWLEHLRQHDRVTNADRIDQNAIRHFHASAEPRVTHLLAAKFPA
Sequences:
>Translated_539_residues MTNVERDPPMTAETRASPWIAFRHTAFTVVWTATVVANVGTWMYNAASGWLMTSLEADPLTVSLVQVASSLPMFLFAIPA GALADIVDKRRFLILIEIVLTVFAAASAVLVWLGLMNPFQLLLFTFLLGAGAAFAAPAWQSIVPDLVPKEHLASAVASNG VGINVSRAIGPALGGVVIGVAGIAAPFWINALSNFAVIGALLWWRPAAKRAATLPPERLFSAIVIGFRHARYNLDLRATL VRAVAFFFFASAYWALLPLVARSRIAGGPELYGILLGAIGLGAIVGAFLLQGLKSALGPDRLVAAGTLGTAVSLVLLGSV QRVELATAACFIAGVSWIAVLANLNVSVQVALPDWVRGRGLAMFVTVFFGAMTAGSALWGQLASSFGLPAAHFAAAVGAV VGIAVTWRWKLRGSAEHDLAPSMHWPAPVLAIDADADQGPVLITVEYHVAADRRDAFLLAMRKLSRQRRRDGAYAWDVFE DTSERGRFVEVFKVASWLEHLRQHDRVTNADRIDQNAIRHFHASAEPRVTHLLAAKFPA >Mature_538_residues TNVERDPPMTAETRASPWIAFRHTAFTVVWTATVVANVGTWMYNAASGWLMTSLEADPLTVSLVQVASSLPMFLFAIPAG ALADIVDKRRFLILIEIVLTVFAAASAVLVWLGLMNPFQLLLFTFLLGAGAAFAAPAWQSIVPDLVPKEHLASAVASNGV GINVSRAIGPALGGVVIGVAGIAAPFWINALSNFAVIGALLWWRPAAKRAATLPPERLFSAIVIGFRHARYNLDLRATLV RAVAFFFFASAYWALLPLVARSRIAGGPELYGILLGAIGLGAIVGAFLLQGLKSALGPDRLVAAGTLGTAVSLVLLGSVQ RVELATAACFIAGVSWIAVLANLNVSVQVALPDWVRGRGLAMFVTVFFGAMTAGSALWGQLASSFGLPAAHFAAAVGAVV GIAVTWRWKLRGSAEHDLAPSMHWPAPVLAIDADADQGPVLITVEYHVAADRRDAFLLAMRKLSRQRRRDGAYAWDVFED TSERGRFVEVFKVASWLEHLRQHDRVTNADRIDQNAIRHFHASAEPRVTHLLAAKFPA
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57744; Mature: 57613
Theoretical pI: Translated: 10.33; Mature: 10.33
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNVERDPPMTAETRASPWIAFRHTAFTVVWTATVVANVGTWMYNAASGWLMTSLEADPL CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH TVSLVQVASSLPMFLFAIPAGALADIVDKRRFLILIEIVLTVFAAASAVLVWLGLMNPFQ HHHHHHHHHHCCHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LLLFTFLLGAGAAFAAPAWQSIVPDLVPKEHLASAVASNGVGINVSRAIGPALGGVVIGV HHHHHHHHHCCCHHCCCCHHHHCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH AGIAAPFWINALSNFAVIGALLWWRPAAKRAATLPPERLFSAIVIGFRHARYNLDLRATL HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH VRAVAFFFFASAYWALLPLVARSRIAGGPELYGILLGAIGLGAIVGAFLLQGLKSALGPD HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RLVAAGTLGTAVSLVLLGSVQRVELATAACFIAGVSWIAVLANLNVSVQVALPDWVRGRG CEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCC LAMFVTVFFGAMTAGSALWGQLASSFGLPAAHFAAAVGAVVGIAVTWRWKLRGSAEHDLA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCC PSMHWPAPVLAIDADADQGPVLITVEYHVAADRRDAFLLAMRKLSRQRRRDGAYAWDVFE CCCCCCCCEEEEECCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEHHH DTSERGRFVEVFKVASWLEHLRQHDRVTNADRIDQNAIRHFHASAEPRVTHLLAAKFPA CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC >Mature Secondary Structure TNVERDPPMTAETRASPWIAFRHTAFTVVWTATVVANVGTWMYNAASGWLMTSLEADPL CCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH TVSLVQVASSLPMFLFAIPAGALADIVDKRRFLILIEIVLTVFAAASAVLVWLGLMNPFQ HHHHHHHHHHCCHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LLLFTFLLGAGAAFAAPAWQSIVPDLVPKEHLASAVASNGVGINVSRAIGPALGGVVIGV HHHHHHHHHCCCHHCCCCHHHHCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH AGIAAPFWINALSNFAVIGALLWWRPAAKRAATLPPERLFSAIVIGFRHARYNLDLRATL HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH VRAVAFFFFASAYWALLPLVARSRIAGGPELYGILLGAIGLGAIVGAFLLQGLKSALGPD HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RLVAAGTLGTAVSLVLLGSVQRVELATAACFIAGVSWIAVLANLNVSVQVALPDWVRGRG CEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCC LAMFVTVFFGAMTAGSALWGQLASSFGLPAAHFAAAVGAVVGIAVTWRWKLRGSAEHDLA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCC PSMHWPAPVLAIDADADQGPVLITVEYHVAADRRDAFLLAMRKLSRQRRRDGAYAWDVFE CCCCCCCCEEEEECCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEHHH DTSERGRFVEVFKVASWLEHLRQHDRVTNADRIDQNAIRHFHASAEPRVTHLLAAKFPA CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA