Click here to switch to the map view.

The map label for this gene is 86747176

Identifier: 86747176

GI number: 86747176

Start: 50507

End: 51430

Strand: Direct

Name: 86747176

Synonym: RPB_0049

Alternate gene names: NA

Gene position: 50507-51430 (Clockwise)

Preceding gene: 86747174

Following gene: 86747178

Centisome position: 0.95

GC content: 65.8

Gene sequence:

>924_bases
ATGGGCATTGTGTTCGATGCCATCGGCAAGGTCATCGCCGGCTATCTGCAGAAGGAAGAGCCGGGCTACGAGCCGTTCAC
GCCGAGCGATCCCGACCATCTGCGCACCATCATGCAGCCCGGCGACGTGCTGCTGGTCGAAGGCAATGCGCGGATCTCCG
GCATCATCAAATATCTGACCCAATCGACCTGGTCGCATGCGGCCCTGTATGTCGGCCCGATCGACGGGGCGGCCGAGCCC
GACGGCGAGCCGCATGTGCTGATCGAGGCCAATATCGGCGAGGGCGTCTCGTCGTCGCCGCTGTCGCGGCATCTGAACTA
TCACACGCGGATCTGCCGCCCGGTCGGCCTGTCGCACGAGGACCGCCACACCGTGTGCCGCTACGCCATCAACCGGATCG
GCTTCGGCTACGACACCAAGAACATCATCGACCTGATGCGCTATTTGGTACCGATGCCGGTGCCGCAGCGCTGGCGCCGA
CGGATGATCGCGCTCGGCTCCGGCGATCCGACCAAGATCATCTGCTCGGCGCTGATCGCGCAGGCGTTCGATGCGGTGCG
CTACCCGATCCTGCCCAAGATCACCAAGGCCGGCAGCCGCGCCGCGCGCCGCGAGATCCTGCACATCCGCGATTCGTCGC
TGTACATGCCGCGCGACTTCGACATCTCGCCGTATTTCGAAGTGGTGAAGCCGACCATCGTCAACGGCTTCGACTACACC
GCGCTGCACTGGGCCGACAAGCAGAAGCCGCTCGCGGAGGTAGCGGGCCCGTTCAGTACCTTTCAGGACGGACTGGACCC
GGCGCCGCCGCTCGTTCCTGCGCCGGCTGACGCGGAAGCGGCGGCTTGCGATGCGCAAGTGATGGATACCGCCCTCCATC
ACCAAGCGCCCGCTCCGACGCCGGCCCGGGAACCCGCGAACTAG

Upstream 100 bases:

>100_bases
GATCGGTATACGGGCGGCGGAACCGATGAACTAAATTGCAACGGCTCTCCACAATGATGAGCCGGCCAACAGAGCGTGAC
GACGTCGCGGGAGTGAACGG

Downstream 100 bases:

>100_bases
CCGCTACGCGACGCGCGACGCGCTGACCGGGAACGCACCGCCGGCCGTGCCCTGCCGATCGAGCAGGTCCCTGAGCTCGT
CGTTCGGCCGCGCCGGGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MGIVFDAIGKVIAGYLQKEEPGYEPFTPSDPDHLRTIMQPGDVLLVEGNARISGIIKYLTQSTWSHAALYVGPIDGAAEP
DGEPHVLIEANIGEGVSSSPLSRHLNYHTRICRPVGLSHEDRHTVCRYAINRIGFGYDTKNIIDLMRYLVPMPVPQRWRR
RMIALGSGDPTKIICSALIAQAFDAVRYPILPKITKAGSRAARREILHIRDSSLYMPRDFDISPYFEVVKPTIVNGFDYT
ALHWADKQKPLAEVAGPFSTFQDGLDPAPPLVPAPADAEAAACDAQVMDTALHHQAPAPTPAREPAN

Sequences:

>Translated_307_residues
MGIVFDAIGKVIAGYLQKEEPGYEPFTPSDPDHLRTIMQPGDVLLVEGNARISGIIKYLTQSTWSHAALYVGPIDGAAEP
DGEPHVLIEANIGEGVSSSPLSRHLNYHTRICRPVGLSHEDRHTVCRYAINRIGFGYDTKNIIDLMRYLVPMPVPQRWRR
RMIALGSGDPTKIICSALIAQAFDAVRYPILPKITKAGSRAARREILHIRDSSLYMPRDFDISPYFEVVKPTIVNGFDYT
ALHWADKQKPLAEVAGPFSTFQDGLDPAPPLVPAPADAEAAACDAQVMDTALHHQAPAPTPAREPAN
>Mature_306_residues
GIVFDAIGKVIAGYLQKEEPGYEPFTPSDPDHLRTIMQPGDVLLVEGNARISGIIKYLTQSTWSHAALYVGPIDGAAEPD
GEPHVLIEANIGEGVSSSPLSRHLNYHTRICRPVGLSHEDRHTVCRYAINRIGFGYDTKNIIDLMRYLVPMPVPQRWRRR
MIALGSGDPTKIICSALIAQAFDAVRYPILPKITKAGSRAARREILHIRDSSLYMPRDFDISPYFEVVKPTIVNGFDYTA
LHWADKQKPLAEVAGPFSTFQDGLDPAPPLVPAPADAEAAACDAQVMDTALHHQAPAPTPAREPAN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33721; Mature: 33590

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIVFDAIGKVIAGYLQKEEPGYEPFTPSDPDHLRTIMQPGDVLLVEGNARISGIIKYLT
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
QSTWSHAALYVGPIDGAAEPDGEPHVLIEANIGEGVSSSPLSRHLNYHTRICRPVGLSHE
HHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
DRHTVCRYAINRIGFGYDTKNIIDLMRYLVPMPVPQRWRRRMIALGSGDPTKIICSALIA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHEEECCCCCHHHHHHHHHHH
QAFDAVRYPILPKITKAGSRAARREILHIRDSSLYMPRDFDISPYFEVVKPTIVNGFDYT
HHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCEECCCCCCCCHHHHHHHHHHCCCCCCE
ALHWADKQKPLAEVAGPFSTFQDGLDPAPPLVPAPADAEAAACDAQVMDTALHHQAPAPT
EEECCCCCCCHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
PAREPAN
CCCCCCC
>Mature Secondary Structure 
GIVFDAIGKVIAGYLQKEEPGYEPFTPSDPDHLRTIMQPGDVLLVEGNARISGIIKYLT
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
QSTWSHAALYVGPIDGAAEPDGEPHVLIEANIGEGVSSSPLSRHLNYHTRICRPVGLSHE
HHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
DRHTVCRYAINRIGFGYDTKNIIDLMRYLVPMPVPQRWRRRMIALGSGDPTKIICSALIA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHEEECCCCCHHHHHHHHHHH
QAFDAVRYPILPKITKAGSRAARREILHIRDSSLYMPRDFDISPYFEVVKPTIVNGFDYT
HHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCEECCCCCCCCHHHHHHHHHHCCCCCCE
ALHWADKQKPLAEVAGPFSTFQDGLDPAPPLVPAPADAEAAACDAQVMDTALHHQAPAPT
EEECCCCCCCHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
PAREPAN
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA