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The map label for this gene is ycjD [H]

Identifier: 86747173

GI number: 86747173

Start: 45527

End: 46018

Strand: Direct

Name: ycjD [H]

Synonym: RPB_0046

Alternate gene names: 86747173

Gene position: 45527-46018 (Clockwise)

Preceding gene: 86747172

Following gene: 86747174

Centisome position: 0.85

GC content: 65.04

Gene sequence:

>492_bases
ATGGACGATTCGAAGCAGCCGACCTGGAAAGTGTCGCCCAGCCTGCGCCGCCATGCGCGCGAGTTGCGGAAGAAGTCGAC
CGACGCCGAGCGGCTGATGTGGGGCGAGCTGCGCGACAAGCGCCTCGGTGGGTTTTCGTTCAAGCGCCAGGTGCCGATCG
GGCCGTTCATCGCCGACTTTGCCTGCCATTCGGTGAAGCTGGTGGTCGAGATCGACGGCGGTCAGCATTTTGCGGACGCT
GCCGAGCGCGCTGACGCGGCCCGCACGGCGGCGATCGAGGCGCGCGGCTTTCGGGTGATTCGCTTTAGCAATGCCGACGT
GATGAGTAATCGTGACGGGGTGTTGCAGAGCATCGCGACCGAGCTAGCGGCAAGGGCCCTCACCCCAACCCTCTCCCGCA
AGCGGGAGAGGGAGCGCGCCGCGCGCGAGGCCAAGCAGCGACCTGACCAAACAACTTCAAAGCAGCGTCATTCAACGGAC
GATGCGGACTAA

Upstream 100 bases:

>100_bases
AGTTGAGATGATTCAAAGCCCTGCAACACCGCACGACGCGCTCCCTCTCCCGCTTGCGGGAGAGGGTCGGGGTGAGGGCG
ACACGGGGACGGAGCTTGCG

Downstream 100 bases:

>100_bases
CAGCATGACACGCGCCCCCTCCATCCGGCACGACGCGCCCCCTCTCCCGCTTGCGGGAGAGGGTTGGGGTGAGGGCGATG
CGGGTCGCAGTCCTTCATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MDDSKQPTWKVSPSLRRHARELRKKSTDAERLMWGELRDKRLGGFSFKRQVPIGPFIADFACHSVKLVVEIDGGQHFADA
AERADAARTAAIEARGFRVIRFSNADVMSNRDGVLQSIATELAARALTPTLSRKRERERAAREAKQRPDQTTSKQRHSTD
DAD

Sequences:

>Translated_163_residues
MDDSKQPTWKVSPSLRRHARELRKKSTDAERLMWGELRDKRLGGFSFKRQVPIGPFIADFACHSVKLVVEIDGGQHFADA
AERADAARTAAIEARGFRVIRFSNADVMSNRDGVLQSIATELAARALTPTLSRKRERERAAREAKQRPDQTTSKQRHSTD
DAD
>Mature_163_residues
MDDSKQPTWKVSPSLRRHARELRKKSTDAERLMWGELRDKRLGGFSFKRQVPIGPFIADFACHSVKLVVEIDGGQHFADA
AERADAARTAAIEARGFRVIRFSNADVMSNRDGVLQSIATELAARALTPTLSRKRERERAAREAKQRPDQTTSKQRHSTD
DAD

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=115, Percent_Identity=43.4782608695652, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 18373; Mature: 18373

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDSKQPTWKVSPSLRRHARELRKKSTDAERLMWGELRDKRLGGFSFKRQVPIGPFIADF
CCCCCCCCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
ACHSVKLVVEIDGGQHFADAAERADAARTAAIEARGFRVIRFSNADVMSNRDGVLQSIAT
HHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH
ELAARALTPTLSRKRERERAAREAKQRPDQTTSKQRHSTDDAD
HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MDDSKQPTWKVSPSLRRHARELRKKSTDAERLMWGELRDKRLGGFSFKRQVPIGPFIADF
CCCCCCCCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
ACHSVKLVVEIDGGQHFADAAERADAARTAAIEARGFRVIRFSNADVMSNRDGVLQSIAT
HHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH
ELAARALTPTLSRKRERERAAREAKQRPDQTTSKQRHSTDDAD
HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]