| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86610351
Identifier: 86610351
GI number: 86610351
Start: 3032231
End: 3033451
Strand: Direct
Name: 86610351
Synonym: CYB_2931
Alternate gene names: NA
Gene position: 3032231-3033451 (Clockwise)
Preceding gene: 86610350
Following gene: 86610352
Centisome position: 99.53
GC content: 59.13
Gene sequence:
>1221_bases ATGGCCTTCTGGATCTACGTTGTGCCCCCGCTGGCCGGGCTGGTGATCGGCTATTTCACCAACGACATTGCCATCAAAAT GCTGTTCCGGCCCTACCGCCCCTATCGGGTTTTCGGCTGGCGCATCCCCTTTACCCCCGGTTTGATCCCGCAGAACCAAC CCCGTCTGGCCAAGCAGATCGCCAAGACCATCATGGGATCCCTGCTCACGCCGGAGGAACTGCACAATCTGGCCCGTAAG CTGCTGCAAACCGAGCGCATGCAAGCTGGGATCCGCTGGCTGCTGGGGGTAGCTCTGGATCGGCTGCAAAACCCTGAGCA GCAGCAGCAAACCGCCCAGGTGTTGGCGCGCATTTTGGCCGATCTGTTTAACGAGTCGTTGCCCCGCCTGGTGAAGGTGC TGGCCCGTCAAGAAACCTTTTTGGAAGGGCCCATTAACCAACTGTTCGACCAAGTGTTGCTGGAGCTGCGCCTCAGCAGC GAGCAGGCTAAGCAGCTCTCGGAGTGGATCCTGAAGCAGGCGCTGCCCCCAAAGGTATTGCGGCAGAACTTGGTGGACTT TCTCACCGATCGCAACATCGAATCCCTTGACGAGGAGTTTCGTGAACGAGCGACCGGCTCCTACTGGGTGGTGGCCAACT TGTTCGGCCTGAAAAATGCCCTGTTGCGCCTGCGCACCTATTGTCTAGAAGAGCCGGAAGGGGCAGAAGCCATCTTGGAA GATCTGCTCAAAGACATCAACGCCTCCCGCCGCCTGACCGAGATCCTGCAGAACCTCTCGCTGCAAAACCTGCCGGTTTC CGCCGTGCGTCAGTTGCGCCGTGCCCTCCGCGACGGGATCCAAGATTACCTGCGCAGCCAAGGGCCAGAGGTTATCAAAG GGCTGGGGGAGACCATCGATTGGGAAAAAGTGGCCAGCCTGGTGTTGGGACGCCTGCGCAACTCCAAGGCGTTGATCACC TCCATCGATCAGATCAGCGCCGACCTGGCTTTGGTCTTGGAGCGCTACCTAGAACGGGATCTCGAATCCCTGATGATGCA GGTGATCCCGGTGTTGAACCTGGATCAGGTCATTGCCGATAAAGTCAACGCCACCTCCCCTGCCGACCTGGAGCAGGCCA TCCAGCAGATCGTGCGCCAAGAACTCCAGGCCATCGTCAACTTAGGCGGCCTCCTCGGCTTTTTGGTGGGCTGTGTACAG GTGCTGTTCTTGCTGGGCTGA
Upstream 100 bases:
>100_bases GATCATCCAATGAACTGGCCAACCCTCTTTTGCCCTGTGGCTGGCTGAAGTGACTCGGGGCAGCTCGGTAGAGTAGAAGA GAGCCCCCTCCATTGCTTCC
Downstream 100 bases:
>100_bases CGAGTTTGGGTTGGGCTTTGACTTTGGCTATGATATGAGAATGCGATTAACAATTCTCCACACTTCGGATCTCCATGCCA ATCTACATCCCTGGAACTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MAFWIYVVPPLAGLVIGYFTNDIAIKMLFRPYRPYRVFGWRIPFTPGLIPQNQPRLAKQIAKTIMGSLLTPEELHNLARK LLQTERMQAGIRWLLGVALDRLQNPEQQQQTAQVLARILADLFNESLPRLVKVLARQETFLEGPINQLFDQVLLELRLSS EQAKQLSEWILKQALPPKVLRQNLVDFLTDRNIESLDEEFRERATGSYWVVANLFGLKNALLRLRTYCLEEPEGAEAILE DLLKDINASRRLTEILQNLSLQNLPVSAVRQLRRALRDGIQDYLRSQGPEVIKGLGETIDWEKVASLVLGRLRNSKALIT SIDQISADLALVLERYLERDLESLMMQVIPVLNLDQVIADKVNATSPADLEQAIQQIVRQELQAIVNLGGLLGFLVGCVQ VLFLLG
Sequences:
>Translated_406_residues MAFWIYVVPPLAGLVIGYFTNDIAIKMLFRPYRPYRVFGWRIPFTPGLIPQNQPRLAKQIAKTIMGSLLTPEELHNLARK LLQTERMQAGIRWLLGVALDRLQNPEQQQQTAQVLARILADLFNESLPRLVKVLARQETFLEGPINQLFDQVLLELRLSS EQAKQLSEWILKQALPPKVLRQNLVDFLTDRNIESLDEEFRERATGSYWVVANLFGLKNALLRLRTYCLEEPEGAEAILE DLLKDINASRRLTEILQNLSLQNLPVSAVRQLRRALRDGIQDYLRSQGPEVIKGLGETIDWEKVASLVLGRLRNSKALIT SIDQISADLALVLERYLERDLESLMMQVIPVLNLDQVIADKVNATSPADLEQAIQQIVRQELQAIVNLGGLLGFLVGCVQ VLFLLG >Mature_405_residues AFWIYVVPPLAGLVIGYFTNDIAIKMLFRPYRPYRVFGWRIPFTPGLIPQNQPRLAKQIAKTIMGSLLTPEELHNLARKL LQTERMQAGIRWLLGVALDRLQNPEQQQQTAQVLARILADLFNESLPRLVKVLARQETFLEGPINQLFDQVLLELRLSSE QAKQLSEWILKQALPPKVLRQNLVDFLTDRNIESLDEEFRERATGSYWVVANLFGLKNALLRLRTYCLEEPEGAEAILED LLKDINASRRLTEILQNLSLQNLPVSAVRQLRRALRDGIQDYLRSQGPEVIKGLGETIDWEKVASLVLGRLRNSKALITS IDQISADLALVLERYLERDLESLMMQVIPVLNLDQVIADKVNATSPADLEQAIQQIVRQELQAIVNLGGLLGFLVGCVQV LFLLG
Specific function: Unknown
COG id: COG4399
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0754 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y2931_SYNJB (Q2JHS8)
Other databases:
- EMBL: CP000240 - RefSeq: YP_479113.1 - STRING: Q2JHS8 - GeneID: 3900464 - GenomeReviews: CP000240_GR - KEGG: cyb:CYB_2931 - TIGR: CYB_2931 - eggNOG: COG4399 - HOGENOM: HBG286546 - OMA: ISDTIMG - ProtClustDB: CLSK893453 - BioCyc: SSP321332:CYB_2931-MONOMER - InterPro: IPR007383 - InterPro: IPR016991 - PIRSF: PIRSF032178
Pfam domain/function: PF04286 DUF445
EC number: NA
Molecular weight: Translated: 46083; Mature: 45951
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0xf39d2d8)-; HASH(0x169bd0c4)-;
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFWIYVVPPLAGLVIGYFTNDIAIKMLFRPYRPYRVFGWRIPFTPGLIPQNQPRLAKQI CEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHH AKTIMGSLLTPEELHNLARKLLQTERMQAGIRWLLGVALDRLQNPEQQQQTAQVLARILA HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH DLFNESLPRLVKVLARQETFLEGPINQLFDQVLLELRLSSEQAKQLSEWILKQALPPKVL HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHH RQNLVDFLTDRNIESLDEEFRERATGSYWVVANLFGLKNALLRLRTYCLEEPEGAEAILE HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH DLLKDINASRRLTEILQNLSLQNLPVSAVRQLRRALRDGIQDYLRSQGPEVIKGLGETID HHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC WEKVASLVLGRLRNSKALITSIDQISADLALVLERYLERDLESLMMQVIPVLNLDQVIAD HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH KVNATSPADLEQAIQQIVRQELQAIVNLGGLLGFLVGCVQVLFLLG HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH >Mature Secondary Structure AFWIYVVPPLAGLVIGYFTNDIAIKMLFRPYRPYRVFGWRIPFTPGLIPQNQPRLAKQI EEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHH AKTIMGSLLTPEELHNLARKLLQTERMQAGIRWLLGVALDRLQNPEQQQQTAQVLARILA HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH DLFNESLPRLVKVLARQETFLEGPINQLFDQVLLELRLSSEQAKQLSEWILKQALPPKVL HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHH RQNLVDFLTDRNIESLDEEFRERATGSYWVVANLFGLKNALLRLRTYCLEEPEGAEAILE HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH DLLKDINASRRLTEILQNLSLQNLPVSAVRQLRRALRDGIQDYLRSQGPEVIKGLGETID HHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC WEKVASLVLGRLRNSKALITSIDQISADLALVLERYLERDLESLMMQVIPVLNLDQVIAD HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH KVNATSPADLEQAIQQIVRQELQAIVNLGGLLGFLVGCVQVLFLLG HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA