Click here to switch to the map view.

The map label for this gene is rbpD [H]

Identifier: 86610200

GI number: 86610200

Start: 2869600

End: 2869851

Strand: Direct

Name: rbpD [H]

Synonym: CYB_2774

Alternate gene names: 86610200

Gene position: 2869600-2869851 (Clockwise)

Preceding gene: 86610199

Following gene: 86610201

Centisome position: 94.19

GC content: 54.37

Gene sequence:

>252_bases
ATGACCATTTTTGTGGGGAACCTAAACTATAAAGCCTCAACAGAAGAACTGAAAGCTTTCTTCCAGCAGAGGTGGAACGT
TAAGTCGGTTACAATCCCGATAGACCGAGAGACAGGTCAGACACGAGGCTTCGCGTTTGTGGATCTGGCAACCGAAGCTG
AGGAGGACGAAGCCATCGAGAGCGCGAACGGGCAGGAATTCATGGGCCGGCCTCTGCGTTTGGATCGAGCCAGGCCCCGC
CGCCAAGCCTAA

Upstream 100 bases:

>100_bases
TCATGTTCGGCGATTCGGCAGGGCTCCATGATAGAAGTGAAGTACTCTGGAGCTTTGTTGCCACCCTTGCTGATTGGTGA
CTTACTTTGCTTGAATTGCC

Downstream 100 bases:

>100_bases
GCAAAGATTGTTCAACCCTGGGTTTGCCATTCTGGGCAACCAAAGGACTCCGTCCCGCTAACGCGAACGGCAAGGTTTAT
CCCAACAGATGGGAGAGCTG

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MTIFVGNLNYKASTEELKAFFQQRWNVKSVTIPIDRETGQTRGFAFVDLATEAEEDEAIESANGQEFMGRPLRLDRARPR
RQA

Sequences:

>Translated_83_residues
MTIFVGNLNYKASTEELKAFFQQRWNVKSVTIPIDRETGQTRGFAFVDLATEAEEDEAIESANGQEFMGRPLRLDRARPR
RQA
>Mature_82_residues
TIFVGNLNYKASTEELKAFFQQRWNVKSVTIPIDRETGQTRGFAFVDLATEAEEDEAIESANGQEFMGRPLRLDRARPRR
QA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=39.4736842105263, Blast_Score=62, Evalue=7e-11,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=39.4736842105263, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=44.1558441558442, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=41.25, Blast_Score=70, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=42.8571428571429, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9522; Mature: 9391

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIFVGNLNYKASTEELKAFFQQRWNVKSVTIPIDRETGQTRGFAFVDLATEAEEDEAIE
CEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCHHHH
SANGQEFMGRPLRLDRARPRRQA
CCCCHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TIFVGNLNYKASTEELKAFFQQRWNVKSVTIPIDRETGQTRGFAFVDLATEAEEDEAIE
EEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCHHHH
SANGQEFMGRPLRLDRARPRRQA
CCCCHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]