Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609978

Identifier: 86609978

GI number: 86609978

Start: 2650188

End: 2650430

Strand: Direct

Name: 86609978

Synonym: CYB_2544

Alternate gene names: NA

Gene position: 2650188-2650430 (Clockwise)

Preceding gene: 86609977

Following gene: 86609979

Centisome position: 86.99

GC content: 49.79

Gene sequence:

>243_bases
TTGCAGTTCAGCCCCTATCTCCACAAAATGGATGCCATGACTCCTGAAATGGTACGCCAGTTTTGGTCTTTGGTCAGCGA
GATTGGCAGGCCAGATTGGCTCACAAAGCGTGACGATGACTTGGTGAACCTGCTTCTGAGCGCCTGTCAGAAAAAACACG
CCCTCAGCAGTGTCGATGCCTCAATTCTCAATCGCTACATCAGCATTCGCTTGCCCTTGATTCGCGATATCCTTGTGGAT
TAA

Upstream 100 bases:

>100_bases
AAAGCATAACATCTTATCCTAAGTTGTGACGGAGCTGAAATATTGTCCTCGGGGATGAGGTCTTTTTTCTAGAATCGAAT
CGATGGCCTAGACCATTCTT

Downstream 100 bases:

>100_bases
GCCCGGAGAGGACAAGGTTTTCCCATCATGCTGGCCGCACAAATCACCTTGCTGGTCTACGGGGCACTGCTTTTGGTGGG
CGGAGCAATCGGCTATAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MQFSPYLHKMDAMTPEMVRQFWSLVSEIGRPDWLTKRDDDLVNLLLSACQKKHALSSVDASILNRYISIRLPLIRDILVD

Sequences:

>Translated_80_residues
MQFSPYLHKMDAMTPEMVRQFWSLVSEIGRPDWLTKRDDDLVNLLLSACQKKHALSSVDASILNRYISIRLPLIRDILVD
>Mature_80_residues
MQFSPYLHKMDAMTPEMVRQFWSLVSEIGRPDWLTKRDDDLVNLLLSACQKKHALSSVDASILNRYISIRLPLIRDILVD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9316; Mature: 9316

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFSPYLHKMDAMTPEMVRQFWSLVSEIGRPDWLTKRDDDLVNLLLSACQKKHALSSVDA
CCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SILNRYISIRLPLIRDILVD
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQFSPYLHKMDAMTPEMVRQFWSLVSEIGRPDWLTKRDDDLVNLLLSACQKKHALSSVDA
CCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SILNRYISIRLPLIRDILVD
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA