| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609962
Identifier: 86609962
GI number: 86609962
Start: 2629261
End: 2630583
Strand: Direct
Name: 86609962
Synonym: CYB_2528
Alternate gene names: NA
Gene position: 2629261-2630583 (Clockwise)
Preceding gene: 86609961
Following gene: 86609963
Centisome position: 86.3
GC content: 60.02
Gene sequence:
>1323_bases ATGGCTCTCCCCCCTATCGTTGTGTTGGACGATGATCCCACCGGATCCCAAACCGTTCACAGTTGCTTGCTCCTCACCCG CTGGGATCCGCAGACTTTGAAGCTGGGGTTGCAGGATAGCTCGCCAATTCGCTTTATCCTCACCAATACTCGGGCTTTGC CCCCGGCGAAGGCAGCGGAGGTGACGCGGTCGGTATGTGGGGCGTTGAAGGAGGTGATGGCGGAGCTGGGATGTGAGCAG GCTATTTTCGTCAGCCGCTCCGACTCGACGCTGCGGGGGCATTACCCCCTGGAAACGGATGTGATGGCAGCAGAGCTGGG GCCTTTTGATGCCCATTTTCTGGTGCCGGCCTTTTTTGAGGGAGGGCGCATCACCCGCAACAGTGTCCACTACCTACGGG TGGGGGAGCGCTGGGTGCCGGTGCATGAGACGGAGTTTGCTCGGGATGCGGTGTTTGGCTACCACCACAGCTATTTGCCG GACTATGTGCAGGAGAAAACCCAGGGGCGGATCCGGGCTGAGCAGGTGGAGCGATTGACCCTAGAGCAGATTCGCGCCGG CTGTCTGGAGCGGCTTTTGAGTCTGGAGGGGAATGTCTGCTGTGTAGTGGATGGAGAAACTCAAGCGGATTTGGATCGCT TTGCCCAGGATGTTTGGGCGGCTATAGAGCAGGGGAAGCGCTTTTTGTTCCGCAGCGCCGCCAGCCTCTTGACGGCTTTG GCCCAATTGCCGCCACAGCCGGTTCTGCCAGAGCAGATGGGGCGGTTTGTCCGCTCAGATCGGCCAGGGGTGGTGATTGT GGGATCCCATGTGCAAAAGTCCAGCCAGCAGTTGGCCCGCCTTCTGCAGGAGCCTGAAACCCAAGGCATCGAGGTGGAGG TGAGGCGACTATTGGATCCCGACGCGGAGCTGCTGCCTGGGATCCTGGCCCAAGTTCACAGCGCCTATGAGCAGGGTCTG ACGCCGGTGGTCTACACCAGCCGAGAGGAACTGACTTTTGAAAAGGACGCCGTAGAAATGCGCCTGGCTTTTGGACAGAA GGTTTCGCGGTTGTTGATGGGCGTGGTGCAGGGGCTGCCAGAAGGGATCGGCTATCTCATCAGCAAGGGCGGCATCACCT CCAACGACACCCTCAGCACTGGCCTCGACTTGCCGGCGGTGCGTCTGCTGGGGCAAGTCTACCCTGGGATCTCGATGGTG ATCACCCCGTCCGATCATCCCCGCTTTCCCAACCTGCCGGTGGTGTTGTTTCCGGGCAATGTCGGCGAGGTGGATACGCT GGTTTTGATTCATCGTCGCCTCAAAAGTCGGGGCTTGGTCTAG
Upstream 100 bases:
>100_bases GAAGATGGCCAACTTGGGGGAAGATGAAAATAGCGGTTGCCCTTTGAGGGGGATTCGTCTGTCTGGAGTTCTCGGGTTGC TTTGTCATTGAGACGGTCTC
Downstream 100 bases:
>100_bases AGTGAAGTTCCTCCTGCCGATGGCTGAATTCGTCCCCCCGCCAGAAGCCCTGCCCACCTTGGATCGCTGGTGGGGATCCC TGCGGCAGCCGCAGGCGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 440; Mature: 439
Protein sequence:
>440_residues MALPPIVVLDDDPTGSQTVHSCLLLTRWDPQTLKLGLQDSSPIRFILTNTRALPPAKAAEVTRSVCGALKEVMAELGCEQ AIFVSRSDSTLRGHYPLETDVMAAELGPFDAHFLVPAFFEGGRITRNSVHYLRVGERWVPVHETEFARDAVFGYHHSYLP DYVQEKTQGRIRAEQVERLTLEQIRAGCLERLLSLEGNVCCVVDGETQADLDRFAQDVWAAIEQGKRFLFRSAASLLTAL AQLPPQPVLPEQMGRFVRSDRPGVVIVGSHVQKSSQQLARLLQEPETQGIEVEVRRLLDPDAELLPGILAQVHSAYEQGL TPVVYTSREELTFEKDAVEMRLAFGQKVSRLLMGVVQGLPEGIGYLISKGGITSNDTLSTGLDLPAVRLLGQVYPGISMV ITPSDHPRFPNLPVVLFPGNVGEVDTLVLIHRRLKSRGLV
Sequences:
>Translated_440_residues MALPPIVVLDDDPTGSQTVHSCLLLTRWDPQTLKLGLQDSSPIRFILTNTRALPPAKAAEVTRSVCGALKEVMAELGCEQ AIFVSRSDSTLRGHYPLETDVMAAELGPFDAHFLVPAFFEGGRITRNSVHYLRVGERWVPVHETEFARDAVFGYHHSYLP DYVQEKTQGRIRAEQVERLTLEQIRAGCLERLLSLEGNVCCVVDGETQADLDRFAQDVWAAIEQGKRFLFRSAASLLTAL AQLPPQPVLPEQMGRFVRSDRPGVVIVGSHVQKSSQQLARLLQEPETQGIEVEVRRLLDPDAELLPGILAQVHSAYEQGL TPVVYTSREELTFEKDAVEMRLAFGQKVSRLLMGVVQGLPEGIGYLISKGGITSNDTLSTGLDLPAVRLLGQVYPGISMV ITPSDHPRFPNLPVVLFPGNVGEVDTLVLIHRRLKSRGLV >Mature_439_residues ALPPIVVLDDDPTGSQTVHSCLLLTRWDPQTLKLGLQDSSPIRFILTNTRALPPAKAAEVTRSVCGALKEVMAELGCEQA IFVSRSDSTLRGHYPLETDVMAAELGPFDAHFLVPAFFEGGRITRNSVHYLRVGERWVPVHETEFARDAVFGYHHSYLPD YVQEKTQGRIRAEQVERLTLEQIRAGCLERLLSLEGNVCCVVDGETQADLDRFAQDVWAAIEQGKRFLFRSAASLLTALA QLPPQPVLPEQMGRFVRSDRPGVVIVGSHVQKSSQQLARLLQEPETQGIEVEVRRLLDPDAELLPGILAQVHSAYEQGLT PVVYTSREELTFEKDAVEMRLAFGQKVSRLLMGVVQGLPEGIGYLISKGGITSNDTLSTGLDLPAVRLLGQVYPGISMVI TPSDHPRFPNLPVVLFPGNVGEVDTLVLIHRRLKSRGLV
Specific function: Unknown
COG id: COG3395
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48562; Mature: 48431
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALPPIVVLDDDPTGSQTVHSCLLLTRWDPQTLKLGLQDSSPIRFILTNTRALPPAKAAE CCCCCEEEECCCCCCHHHHHHHHHEECCCCHHEEEECCCCCCEEEEEECCCCCCCHHHHH VTRSVCGALKEVMAELGCEQAIFVSRSDSTLRGHYPLETDVMAAELGPFDAHFLVPAFFE HHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCCHHHHHCCCCCCHHHHHHHHC GGRITRNSVHYLRVGERWVPVHETEFARDAVFGYHHSYLPDYVQEKTQGRIRAEQVERLT CCCEECCCEEEEEECCEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH LEQIRAGCLERLLSLEGNVCCVVDGETQADLDRFAQDVWAAIEQGKRFLFRSAASLLTAL HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQLPPQPVLPEQMGRFVRSDRPGVVIVGSHVQKSSQQLARLLQEPETQGIEVEVRRLLDP HHCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC DAELLPGILAQVHSAYEQGLTPVVYTSREELTFEKDAVEMRLAFGQKVSRLLMGVVQGLP CHHHHHHHHHHHHHHHHHCCCCEEEECCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCH EGIGYLISKGGITSNDTLSTGLDLPAVRLLGQVYPGISMVITPSDHPRFPNLPVVLFPGN HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCC VGEVDTLVLIHRRLKSRGLV CCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure ALPPIVVLDDDPTGSQTVHSCLLLTRWDPQTLKLGLQDSSPIRFILTNTRALPPAKAAE CCCCEEEECCCCCCHHHHHHHHHEECCCCHHEEEECCCCCCEEEEEECCCCCCCHHHHH VTRSVCGALKEVMAELGCEQAIFVSRSDSTLRGHYPLETDVMAAELGPFDAHFLVPAFFE HHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCCHHHHHCCCCCCHHHHHHHHC GGRITRNSVHYLRVGERWVPVHETEFARDAVFGYHHSYLPDYVQEKTQGRIRAEQVERLT CCCEECCCEEEEEECCEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH LEQIRAGCLERLLSLEGNVCCVVDGETQADLDRFAQDVWAAIEQGKRFLFRSAASLLTAL HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQLPPQPVLPEQMGRFVRSDRPGVVIVGSHVQKSSQQLARLLQEPETQGIEVEVRRLLDP HHCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC DAELLPGILAQVHSAYEQGLTPVVYTSREELTFEKDAVEMRLAFGQKVSRLLMGVVQGLP CHHHHHHHHHHHHHHHHHCCCCEEEECCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCH EGIGYLISKGGITSNDTLSTGLDLPAVRLLGQVYPGISMVITPSDHPRFPNLPVVLFPGN HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCC VGEVDTLVLIHRRLKSRGLV CCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA