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The map label for this gene is sodB [H]

Identifier: 86609948

GI number: 86609948

Start: 2608752

End: 2609351

Strand: Direct

Name: sodB [H]

Synonym: CYB_2514

Alternate gene names: 86609948

Gene position: 2608752-2609351 (Clockwise)

Preceding gene: 86609947

Following gene: 86609950

Centisome position: 85.63

GC content: 58.0

Gene sequence:

>600_bases
ATGGCTTTTGAACTCCCGGCTCTGCCCTATCCTGCCGACGCGCTGAAGCCCTACATGTCGGCAGAAACGTTTTCCTTCCA
CCACGGCAAGCACCACGCGGCCTACGTAGCCAACCTGAACAAGCTCATCGAGGGCACCGATCTGGCCAACAAGTCTCTGG
AGGAGATCATCAAAGCCACCTTTGGGGATCCTGACAAAGTGGGTATCTTCAACAATGCCGCCCAAGTTTGGAACCACACC
TTTTTCTGGGAATCCATGAAGCCGGGCGGGGGAGGTGCGCCTACCGGGCCTATCGCCGACAAGATCAACGCCGATTTCGG
CAGCTACGACAAGTTTGTCGAGGCTTTCAAGACGGCGGCTGCCACCCAGTTTGGCAGTGGTTGGGCTTGGCTGGTGCTGG
AGGATGGCACGCTGAAGGTTACCAAAACCCCCAATGCCGAAAATCCGCTGGTTCACGGTCAAACGCCCCTGCTCACCTTG
GATGTGTGGGAGCACGCCTACTACCTGGATTACCAAAACCGGCGGCCTGACTTCATCAATGCCTACCTGGAGCACTTGGT
GAACTGGGATGCCGCCAATGCCCGGCTGGCTGCCGCCTGA

Upstream 100 bases:

>100_bases
CTAAAACTGCAAAGAAAGGTAACGCCTTTTTCTGGTTCTCCTGACCCTTCACCGCGTTCTTTCTTGCATTCCTTGCACAA
GACACAGAGGACAGACGATT

Downstream 100 bases:

>100_bases
CTCCACCTGTTCTGGGATCCCTTGACGGGGGATCCCATCGAAGACTAGCCCTATGTCTCTGTTTGCGAAGGGATCCTTGG
GGATCCCTTTTTTGCGCCTA

Product: Fe-superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MAFELPALPYPADALKPYMSAETFSFHHGKHHAAYVANLNKLIEGTDLANKSLEEIIKATFGDPDKVGIFNNAAQVWNHT
FFWESMKPGGGGAPTGPIADKINADFGSYDKFVEAFKTAAATQFGSGWAWLVLEDGTLKVTKTPNAENPLVHGQTPLLTL
DVWEHAYYLDYQNRRPDFINAYLEHLVNWDAANARLAAA

Sequences:

>Translated_199_residues
MAFELPALPYPADALKPYMSAETFSFHHGKHHAAYVANLNKLIEGTDLANKSLEEIIKATFGDPDKVGIFNNAAQVWNHT
FFWESMKPGGGGAPTGPIADKINADFGSYDKFVEAFKTAAATQFGSGWAWLVLEDGTLKVTKTPNAENPLVHGQTPLLTL
DVWEHAYYLDYQNRRPDFINAYLEHLVNWDAANARLAAA
>Mature_198_residues
AFELPALPYPADALKPYMSAETFSFHHGKHHAAYVANLNKLIEGTDLANKSLEEIIKATFGDPDKVGIFNNAAQVWNHTF
FWESMKPGGGGAPTGPIADKINADFGSYDKFVEAFKTAAATQFGSGWAWLVLEDGTLKVTKTPNAENPLVHGQTPLLTLD
VWEHAYYLDYQNRRPDFINAYLEHLVNWDAANARLAAA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=207, Percent_Identity=40.5797101449275, Blast_Score=148, Evalue=3e-36,
Organism=Homo sapiens, GI67782305, Length=207, Percent_Identity=40.5797101449275, Blast_Score=148, Evalue=3e-36,
Organism=Homo sapiens, GI67782309, Length=199, Percent_Identity=36.1809045226131, Blast_Score=112, Evalue=3e-25,
Organism=Escherichia coli, GI1787946, Length=202, Percent_Identity=56.4356435643564, Blast_Score=222, Evalue=2e-59,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=44.9275362318841, Blast_Score=165, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=37, Blast_Score=121, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17506561, Length=202, Percent_Identity=37.1287128712871, Blast_Score=120, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6321796, Length=214, Percent_Identity=34.5794392523364, Blast_Score=111, Evalue=6e-26,
Organism=Drosophila melanogaster, GI17136812, Length=199, Percent_Identity=36.1809045226131, Blast_Score=114, Evalue=4e-26,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21984; Mature: 21853

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPALPYPADALKPYMSAETFSFHHGKHHAAYVANLNKLIEGTDLANKSLEEIIKAT
CCCCCCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FGDPDKVGIFNNAAQVWNHTFFWESMKPGGGGAPTGPIADKINADFGSYDKFVEAFKTAA
CCCCCCCCCCCCHHHHHCCEEEECCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHH
ATQFGSGWAWLVLEDGTLKVTKTPNAENPLVHGQTPLLTLDVWEHAYYLDYQNRRPDFIN
HHCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEECCCEEEEECCCCCCHHHH
AYLEHLVNWDAANARLAAA
HHHHHHHCCCCCCCEEECC
>Mature Secondary Structure 
AFELPALPYPADALKPYMSAETFSFHHGKHHAAYVANLNKLIEGTDLANKSLEEIIKAT
CCCCCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FGDPDKVGIFNNAAQVWNHTFFWESMKPGGGGAPTGPIADKINADFGSYDKFVEAFKTAA
CCCCCCCCCCCCHHHHHCCEEEECCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHH
ATQFGSGWAWLVLEDGTLKVTKTPNAENPLVHGQTPLLTLDVWEHAYYLDYQNRRPDFIN
HHCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEECCCEEEEECCCCCCHHHH
AYLEHLVNWDAANARLAAA
HHHHHHHCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]