Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is napA [C]

Identifier: 86609950

GI number: 86609950

Start: 2611355

End: 2613433

Strand: Direct

Name: napA [C]

Synonym: CYB_2516

Alternate gene names: 86609950

Gene position: 2611355-2613433 (Clockwise)

Preceding gene: 86609948

Following gene: 86609951

Centisome position: 85.71

GC content: 60.94

Gene sequence:

>2079_bases
ATGCTGGCTAACTGGCTGCAAATTTCGGGGATCCCTCTAGCCCTGATCGGCCCTGTTGAGAATCCGGTGCTGGTGTTTTT
GATCATCCTGACCATCATGCTGGTGGCTCCCTTGCTATTTGAGCGGCTGCGCCTGCCGGGGATCATCGGGTTAATCTTGG
CTGGGCTGGTGGTGGGGCCCTACGGCTTGGGCATCTTGCGGCGGGACGAGACCATCATCCTGCTGGGCACGGTGGGGCTG
TTGTTTCTCATGTTCATGGCGGGGCTGGAGACCAGTCTGGAAGATTTGAAGCTCAATGCCGGGAAGGCCACCCTCTTCGG
GGCGCTCACCTTTCTGTTGCCCATGCTCATCGGCACAGCAGCCATGTTGGCCATTGGGTATGGCTTTCTGGCGGCGGTGC
TGGTGGCCTCTTGTTTTGCCTCTCACACCCTGATCGGTCTGCCCATCATCTCGAAGCTGGGGTTGATGCGCCTGCAGACG
GTGACGGCAACTTTGGGGGCCACCCTTATCACGAATGTCCTGGCTTTGTTGGTGCTGGCGGTGGTGGTGCGCGCCCACCA
AGGGGAGCTGTCGCTGCGCTTTTGGCTGACGTTGATCCCTTCCATTGCCCTCTACACCTTTGCCACCCTGTGGGGGGTGC
CTAAGCTGGGCAGTTGGTTCTTTCAACGCTTTGGTCACGACGAGGGAGCAGAGTTTACTTTCGTGATCGCCACTTTGTTT
GTGGTGGCCTACGGAGCGGGGTTGATCGGCATTGAGCCGGTGGTGGGAGCCTTTCTGGCCGGGACGGCCATCACCCCTAT
CATCCCCCAGCTCAGCCCCCTGATGAACCGGATTCAGTTTATCGGCAACACCCTGTTTGTGCCTTTCTTCTTGATCTCGG
TGGGGATGCTGATCAATCCCGGTATTCTCTTGGGGGAGCCGCGCACGCTGCTGGTGGGCGGAGTGATGATCGCAGCGGAG
GTGGTGAGCAAGTTTCTGGCCGCTTGGATCCCGGCCCAACTGTTTGGCTGGCGCTTTGCCAGCACGATGATCATGTTCGG
TTTGTCGATGGCTCAGGCGGCGGCTACCCTGGCGGCGATCACGGTGGCCTTTCAGGTGGAGTTGGTGGATGAGCTGACGG
TGAACGGCACCATTGCCATGATCCTCGTGACCTGTGTTGCCTCGCCTTGGATTGTGGCCCGCTGGGGAGAGCAAATGCAG
CCCACCGAGGTGGCCGCAGAGTCCACCGAATTGCCCAAGCCGGATTGGGGAGCTCGCGTCTTGGTGCCGGTGGCCAACCC
GGATACCGAAAGCAACCTGCTGCAGTTGGCGTTGATTTTGGCCAAAAAAGATGGGGGAACGCTGCTGCCGCTGCATGTTT
TGTCTGACCGTGCTGGGATCTCGCCGGCAGCCCTGGCTCGGCAAGAGCAGTTGTTGACCTTTGCAGAAGCTCTGGCCCAC
AGCGCCGTGACCCGAGTGGAGCCGATTCGGCGGGTGGATGACTCGGTGGAAAAAGGGATCATTCGCTCGGCGGCGGAACG
GCAGGCAACCTTGGTGATCCTGGGCTGGAAGGGCTACTCCACCTATGCGGAGAACTTTTTCGGCAGCATCATCGACGCGG
TGGTGCGGCAGGTGGGGATCCCAGTCTTGATTACGCGGTTTCCGGTACCCATCGAGACGGCGCGCCGCATCCTCTTGGTT
GCACCGGAGCCGGAGGTCTCTCCCGGATCCCTGCAGCAGACCATTGGGCTGGCGCAAACGCTGGCCGGCGAATTGAAAGC
GGGTTTGCAGATCCTGCTGGTGCAAACCCGACCTGGGCGGAAAAGCTCCCCAGCCTTGCCGGCAGAAAGCTATGCTCACC
TGCCGGTTCAGCGGGTGCAGGGGGGGGTGGTGGCGGAAGCCTTCAAAGCGCTGCAGCCAGGAGATGTGTTGGTATTGGTT
CCCAGCGAAACCGGCAACCGGTCGCGTCTGGGCCGAGAGCCGGAGACCATCGCCCGCAACCGACCCAGCCTTCCCATCAT
CGTGGTGCATTTGCCACGGGATTCAGCTCATCCCTTGCGCCAAGGAGATGGGGTTCTGGCGGCCGCAGAGCCCACTTGA

Upstream 100 bases:

>100_bases
AGTCTGTGGGGCATCGAGAGCTACTTGGATCTGGAGGGATCTGATAGACTCATGCGGGCGCTTTGCCGGGTCTGTTCATT
AGCTGTCTGTCGGGTGATTT

Downstream 100 bases:

>100_bases
CAGGGATGGCATTGGGGTGTTGTCTGGCGGACTGGAGCTCTTGTCTCAACGACGCCCCGGCTCCCCTGGTAAACTGGGAT
ACCCCAGGTTCGGAGCAGTC

Product: monovalent cation:proton antiporter-2 (CPA2) family protein

Products: NA

Alternate protein names: MjNapA [H]

Number of amino acids: Translated: 692; Mature: 692

Protein sequence:

>692_residues
MLANWLQISGIPLALIGPVENPVLVFLIILTIMLVAPLLFERLRLPGIIGLILAGLVVGPYGLGILRRDETIILLGTVGL
LFLMFMAGLETSLEDLKLNAGKATLFGALTFLLPMLIGTAAMLAIGYGFLAAVLVASCFASHTLIGLPIISKLGLMRLQT
VTATLGATLITNVLALLVLAVVVRAHQGELSLRFWLTLIPSIALYTFATLWGVPKLGSWFFQRFGHDEGAEFTFVIATLF
VVAYGAGLIGIEPVVGAFLAGTAITPIIPQLSPLMNRIQFIGNTLFVPFFLISVGMLINPGILLGEPRTLLVGGVMIAAE
VVSKFLAAWIPAQLFGWRFASTMIMFGLSMAQAAATLAAITVAFQVELVDELTVNGTIAMILVTCVASPWIVARWGEQMQ
PTEVAAESTELPKPDWGARVLVPVANPDTESNLLQLALILAKKDGGTLLPLHVLSDRAGISPAALARQEQLLTFAEALAH
SAVTRVEPIRRVDDSVEKGIIRSAAERQATLVILGWKGYSTYAENFFGSIIDAVVRQVGIPVLITRFPVPIETARRILLV
APEPEVSPGSLQQTIGLAQTLAGELKAGLQILLVQTRPGRKSSPALPAESYAHLPVQRVQGGVVAEAFKALQPGDVLVLV
PSETGNRSRLGREPETIARNRPSLPIIVVHLPRDSAHPLRQGDGVLAAAEPT

Sequences:

>Translated_692_residues
MLANWLQISGIPLALIGPVENPVLVFLIILTIMLVAPLLFERLRLPGIIGLILAGLVVGPYGLGILRRDETIILLGTVGL
LFLMFMAGLETSLEDLKLNAGKATLFGALTFLLPMLIGTAAMLAIGYGFLAAVLVASCFASHTLIGLPIISKLGLMRLQT
VTATLGATLITNVLALLVLAVVVRAHQGELSLRFWLTLIPSIALYTFATLWGVPKLGSWFFQRFGHDEGAEFTFVIATLF
VVAYGAGLIGIEPVVGAFLAGTAITPIIPQLSPLMNRIQFIGNTLFVPFFLISVGMLINPGILLGEPRTLLVGGVMIAAE
VVSKFLAAWIPAQLFGWRFASTMIMFGLSMAQAAATLAAITVAFQVELVDELTVNGTIAMILVTCVASPWIVARWGEQMQ
PTEVAAESTELPKPDWGARVLVPVANPDTESNLLQLALILAKKDGGTLLPLHVLSDRAGISPAALARQEQLLTFAEALAH
SAVTRVEPIRRVDDSVEKGIIRSAAERQATLVILGWKGYSTYAENFFGSIIDAVVRQVGIPVLITRFPVPIETARRILLV
APEPEVSPGSLQQTIGLAQTLAGELKAGLQILLVQTRPGRKSSPALPAESYAHLPVQRVQGGVVAEAFKALQPGDVLVLV
PSETGNRSRLGREPETIARNRPSLPIIVVHLPRDSAHPLRQGDGVLAAAEPT
>Mature_692_residues
MLANWLQISGIPLALIGPVENPVLVFLIILTIMLVAPLLFERLRLPGIIGLILAGLVVGPYGLGILRRDETIILLGTVGL
LFLMFMAGLETSLEDLKLNAGKATLFGALTFLLPMLIGTAAMLAIGYGFLAAVLVASCFASHTLIGLPIISKLGLMRLQT
VTATLGATLITNVLALLVLAVVVRAHQGELSLRFWLTLIPSIALYTFATLWGVPKLGSWFFQRFGHDEGAEFTFVIATLF
VVAYGAGLIGIEPVVGAFLAGTAITPIIPQLSPLMNRIQFIGNTLFVPFFLISVGMLINPGILLGEPRTLLVGGVMIAAE
VVSKFLAAWIPAQLFGWRFASTMIMFGLSMAQAAATLAAITVAFQVELVDELTVNGTIAMILVTCVASPWIVARWGEQMQ
PTEVAAESTELPKPDWGARVLVPVANPDTESNLLQLALILAKKDGGTLLPLHVLSDRAGISPAALARQEQLLTFAEALAH
SAVTRVEPIRRVDDSVEKGIIRSAAERQATLVILGWKGYSTYAENFFGSIIDAVVRQVGIPVLITRFPVPIETARRILLV
APEPEVSPGSLQQTIGLAQTLAGELKAGLQILLVQTRPGRKSSPALPAESYAHLPVQRVQGGVVAEAFKALQPGDVLVLV
PSETGNRSRLGREPETIARNRPSLPIIVVHLPRDSAHPLRQGDGVLAAAEPT

Specific function: This is probably a Na(+)/H(+) antiporter [H]

COG id: COG0475

COG function: function code P; Kef-type K+ transport systems, membrane components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6322367, Length=360, Percent_Identity=23.0555555555556, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006153 [H]

Pfam domain/function: PF00999 Na_H_Exchanger [H]

EC number: NA

Molecular weight: Translated: 73828; Mature: 73828

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLANWLQISGIPLALIGPVENPVLVFLIILTIMLVAPLLFERLRLPGIIGLILAGLVVGP
CCCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
YGLGILRRDETIILLGTVGLLFLMFMAGLETSLEDLKLNAGKATLFGALTFLLPMLIGTA
CCCCEEECCCEEEEEHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHH
AMLAIGYGFLAAVLVASCFASHTLIGLPIISKLGLMRLQTVTATLGATLITNVLALLVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVVRAHQGELSLRFWLTLIPSIALYTFATLWGVPKLGSWFFQRFGHDEGAEFTFVIATLF
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
VVAYGAGLIGIEPVVGAFLAGTAITPIIPQLSPLMNRIQFIGNTLFVPFFLISVGMLINP
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GILLGEPRTLLVGGVMIAAEVVSKFLAAWIPAQLFGWRFASTMIMFGLSMAQAAATLAAI
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVAFQVELVDELTVNGTIAMILVTCVASPWIVARWGEQMQPTEVAAESTELPKPDWGARV
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHCCCCCCCCCCCCEE
LVPVANPDTESNLLQLALILAKKDGGTLLPLHVLSDRAGISPAALARQEQLLTFAEALAH
EEEECCCCCHHHHHHHHHHHEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
SAVTRVEPIRRVDDSVEKGIIRSAAERQATLVILGWKGYSTYAENFFGSIIDAVVRQVGI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
PVLITRFPVPIETARRILLVAPEPEVSPGSLQQTIGLAQTLAGELKAGLQILLVQTRPGR
CEEEECCCCCHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
KSSPALPAESYAHLPVQRVQGGVVAEAFKALQPGDVLVLVPSETGNRSRLGREPETIARN
CCCCCCCCCCCCCCCHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCHHHHCC
RPSLPIIVVHLPRDSAHPLRQGDGVLAAAEPT
CCCCCEEEEECCCCCCCCCCCCCCEEEECCCC
>Mature Secondary Structure
MLANWLQISGIPLALIGPVENPVLVFLIILTIMLVAPLLFERLRLPGIIGLILAGLVVGP
CCCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
YGLGILRRDETIILLGTVGLLFLMFMAGLETSLEDLKLNAGKATLFGALTFLLPMLIGTA
CCCCEEECCCEEEEEHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHH
AMLAIGYGFLAAVLVASCFASHTLIGLPIISKLGLMRLQTVTATLGATLITNVLALLVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVVRAHQGELSLRFWLTLIPSIALYTFATLWGVPKLGSWFFQRFGHDEGAEFTFVIATLF
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
VVAYGAGLIGIEPVVGAFLAGTAITPIIPQLSPLMNRIQFIGNTLFVPFFLISVGMLINP
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GILLGEPRTLLVGGVMIAAEVVSKFLAAWIPAQLFGWRFASTMIMFGLSMAQAAATLAAI
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVAFQVELVDELTVNGTIAMILVTCVASPWIVARWGEQMQPTEVAAESTELPKPDWGARV
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHCCCCCCCCCCCCEE
LVPVANPDTESNLLQLALILAKKDGGTLLPLHVLSDRAGISPAALARQEQLLTFAEALAH
EEEECCCCCHHHHHHHHHHHEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
SAVTRVEPIRRVDDSVEKGIIRSAAERQATLVILGWKGYSTYAENFFGSIIDAVVRQVGI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
PVLITRFPVPIETARRILLVAPEPEVSPGSLQQTIGLAQTLAGELKAGLQILLVQTRPGR
CEEEECCCCCHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
KSSPALPAESYAHLPVQRVQGGVVAEAFKALQPGDVLVLVPSETGNRSRLGREPETIARN
CCCCCCCCCCCCCCCHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCHHHHCC
RPSLPIIVVHLPRDSAHPLRQGDGVLAAAEPT
CCCCCEEEEECCCCCCCCCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]