| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609848
Identifier: 86609848
GI number: 86609848
Start: 2509469
End: 2510266
Strand: Direct
Name: 86609848
Synonym: CYB_2412
Alternate gene names: NA
Gene position: 2509469-2510266 (Clockwise)
Preceding gene: 86609847
Following gene: 86609849
Centisome position: 82.37
GC content: 62.03
Gene sequence:
>798_bases ATGCAACTGACCCGCATCGACCTCAACAGTTGGCTCATCCACACCCGGGAGCAAACCTTCCTATTGGATCCGTGGCTGGT GGATCCCCTGGTGTTTCTGGGGATCCCCTGGTTCATCCGCCTGGAGCACCGCCAGCCGCTCCCTTTTACGCCGGAGACCT TGCCCAAAATCGACGGGATCCTCCTCAGCCAAGCCCAGCCGGATCACTGCCACCCACCAACGTTGCAGCGCCTGGATAAG CGGATCCCCGTTTTGGCCTCGCCGGCTGCAGCCAGAGTCGTGAAGAGTCTAGGATTTGCAACGGTTCAGGCTCTGGATCC CTGGCAGTCTGTTCGCTGGGGGGATCTGCGGGTCACGGCCATTCCCGGTGCGCCCCTAGGGCCTGTCCGTGAGCTGGGCT ATCTGCTGGAAGAGGTGCCCTCTCAGACACGGCTTTACTACGAGCCTCATCTTTCCCAACCGGATGTCCGCCCGCGGCTG CAGCAGGAGTTTGGCTCCATCCATACCCTACTGATTCCGGTGGTGGGGCAGATCTTTCCCCTCTTGGGAGAGGTGATCAT GGGGCCAGAGCGGGCCCTGGAGGTGGTGGCAGCCCTACGCCCCCAGCAGGTGATCCCTACGGCGATGGGAGAGGTGGACT ACCACGGGTGGTTTGCCGCCCAGATCCGCCCCTTGGGCAGCCTGCAGGAGTTTCGAGAAAAGCTGGCAGCCTTGAATGCC GCCACGTCCCAATCCATCCAGTTGTGTTGCCCCGCCCCTGGGGAAACGGTGTCTCTTTCTGTCGTGGCCAAGACATGA
Upstream 100 bases:
>100_bases CTACGTCGAGCCCGAGCCGCAAGTCACACCGGGTGGGCTGTGTCCCCGCATCTGGGTTGCCGATCTCTCCATTACCGGGC AATAACCTCACTTCAAACTC
Downstream 100 bases:
>100_bases GCCTTCCTTCCCAAGCCCCGCCTAGCGCCGATCTGGTGGCCATCTTGCGGGCAGATTACGCTCGCTTTCCCCGGGATCAG ACCTATGCGATCTACGACCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MQLTRIDLNSWLIHTREQTFLLDPWLVDPLVFLGIPWFIRLEHRQPLPFTPETLPKIDGILLSQAQPDHCHPPTLQRLDK RIPVLASPAAARVVKSLGFATVQALDPWQSVRWGDLRVTAIPGAPLGPVRELGYLLEEVPSQTRLYYEPHLSQPDVRPRL QQEFGSIHTLLIPVVGQIFPLLGEVIMGPERALEVVAALRPQQVIPTAMGEVDYHGWFAAQIRPLGSLQEFREKLAALNA ATSQSIQLCCPAPGETVSLSVVAKT
Sequences:
>Translated_265_residues MQLTRIDLNSWLIHTREQTFLLDPWLVDPLVFLGIPWFIRLEHRQPLPFTPETLPKIDGILLSQAQPDHCHPPTLQRLDK RIPVLASPAAARVVKSLGFATVQALDPWQSVRWGDLRVTAIPGAPLGPVRELGYLLEEVPSQTRLYYEPHLSQPDVRPRL QQEFGSIHTLLIPVVGQIFPLLGEVIMGPERALEVVAALRPQQVIPTAMGEVDYHGWFAAQIRPLGSLQEFREKLAALNA ATSQSIQLCCPAPGETVSLSVVAKT >Mature_265_residues MQLTRIDLNSWLIHTREQTFLLDPWLVDPLVFLGIPWFIRLEHRQPLPFTPETLPKIDGILLSQAQPDHCHPPTLQRLDK RIPVLASPAAARVVKSLGFATVQALDPWQSVRWGDLRVTAIPGAPLGPVRELGYLLEEVPSQTRLYYEPHLSQPDVRPRL QQEFGSIHTLLIPVVGQIFPLLGEVIMGPERALEVVAALRPQQVIPTAMGEVDYHGWFAAQIRPLGSLQEFREKLAALNA ATSQSIQLCCPAPGETVSLSVVAKT
Specific function: Unknown
COG id: COG2220
COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29517; Mature: 29517
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLTRIDLNSWLIHTREQTFLLDPWLVDPLVFLGIPWFIRLEHRQPLPFTPETLPKIDGI CCEEEEEHHHHEEEECCCEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHCCE LLSQAQPDHCHPPTLQRLDKRIPVLASPAAARVVKSLGFATVQALDPWQSVRWGDLRVTA EECCCCCCCCCCHHHHHHHHCCCEEECHHHHHHHHHHCHHHHHHCCCHHHCCCCCEEEEE IPGAPLGPVRELGYLLEEVPSQTRLYYEPHLSQPDVRPRLQQEFGSIHTLLIPVVGQIFP ECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LLGEVIMGPERALEVVAALRPQQVIPTAMGEVDYHGWFAAQIRPLGSLQEFREKLAALNA HHHHHHCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEHHCCCCCHHHHHHHHHHHHH ATSQSIQLCCPAPGETVSLSVVAKT CCCCCEEEEECCCCCEEEEEEEECC >Mature Secondary Structure MQLTRIDLNSWLIHTREQTFLLDPWLVDPLVFLGIPWFIRLEHRQPLPFTPETLPKIDGI CCEEEEEHHHHEEEECCCEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHCCE LLSQAQPDHCHPPTLQRLDKRIPVLASPAAARVVKSLGFATVQALDPWQSVRWGDLRVTA EECCCCCCCCCCHHHHHHHHCCCEEECHHHHHHHHHHCHHHHHHCCCHHHCCCCCEEEEE IPGAPLGPVRELGYLLEEVPSQTRLYYEPHLSQPDVRPRLQQEFGSIHTLLIPVVGQIFP ECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LLGEVIMGPERALEVVAALRPQQVIPTAMGEVDYHGWFAAQIRPLGSLQEFREKLAALNA HHHHHHCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEHHCCCCCHHHHHHHHHHHHH ATSQSIQLCCPAPGETVSLSVVAKT CCCCCEEEEECCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA