| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609776
Identifier: 86609776
GI number: 86609776
Start: 2440723
End: 2441973
Strand: Direct
Name: 86609776
Synonym: CYB_2336
Alternate gene names: NA
Gene position: 2440723-2441973 (Clockwise)
Preceding gene: 86609775
Following gene: 86609778
Centisome position: 80.11
GC content: 60.19
Gene sequence:
>1251_bases GTGATCGCTCCTGAGCAACACCTACGCGACCCGAGTCTTTCTCTATCGACACCTCAGGCCACGCAGAAGTTGCGGGAGTT GATTGTCAGCCGCATTCGCGCTCAGGGACCGGTGACCTTTGCCCAGTTTATGGAGTGGGCTCTCTACGAGCCAGGGTTGG GCTATTACGAGCAGGGATCCCCGATTGGCCCCGACTACCTCACCTCTCCCCACCTGGCGGCGGACTTTGCCCAACTGTTG GCGGAGCAGATCCTTCAGTTCTGGCACATTTTGGGATCCCCCCCTGACTTCAAGGTGATCGAGATGGGGGCGGGCAGCGG TCGCCTGGCCCAGGATTGGCTGACCTACGTGCGCTCTGCAAGGCCTGCGGCCCGCTTACGCGAACAGCCCTCTTTTTGGC AGGCGCTGGACTATGGGATCCTGGAGCGTTCTGCCCACCTGCGGCGGCTCCAACAGGAGCGATTGGCTCCTTTTGGGGAG AAGGTGCGCTGGTTGGATTGGGACGGGATCCCGGATGAGTCGGTCACAGGCTGTTTCTTCTCCAATGAGCTGGTGGATGC TTTTCCGGTGCATCGGGTGCAGGTACAGGATGGGGCTTTGCGGGAAATCTATGTCGATTGCAGCGAGGCTGCAGAAGCCG ACTTCCGGGAAGTGCTGGGGGATCTGTCCACTCCTGAGCTGAGGGAGTATTTTGCCCGCTTGGGGATCCCTGTAGAAACT TATCCGTCCGGTTACCAAACCGAGGTGAACCTAAAAGCCTTGGAGTGGCTGCAGCTCCTGGCCCGCAAGCTCCGGCGAGG CTACGTGCTCACCATCGATTATGGCCACACCGCCCAGCGCTACTACAGCCCCCACCGCGCCCAAGGTACGCTCTTGGCCT ACCGACAGCACGGCAGCTATACGGACCCCTATGTTCGGGTGGGATCCCAGGATCTCACCGCTCATGTGGACTTTACGACC CTAGAGCAAGTGGGAGAATCTCTGGGGCTAAGATGTCTGGGGTTCACCCGGCAAAGCAGCTTTTTGGTGAACCTGGGATT GACCGAGCGGCTGGCCGCCCTTAGCCAAATGGGGAACCCGGTTGATGGCGAAGCTGTGGATGTGGGCCAAGTTTTGCGGC GGCGATCCGCTCTTCATGCGCTGCTGGATCCCATGGGGTTGGGGGGCTTTGGAGTATTGGTGCAGGCTAAGGGCCTGACC CCCTCAGAATATGCTCATCCTCTGCGGGGCTTTGGCGAGCCAGAGCTGTGA
Upstream 100 bases:
>100_bases GTGCTGCTGCTCTCAAACCGTCAGTTTCGCCAAAATTGGCGTCGTCCCCTGAACAAGTAAGTTTGAGTTGAGTAAGTCTG GATCCCTGGAATCCTCACCT
Downstream 100 bases:
>100_bases ACCGTTTCGGTGCTATTGGGATGGGATGTCTGCCCCTACCGGCTACCGTTGCCTTCCATCGATGCCAGTTCTGCCATTGC TCTGGCGCTATCTTCCAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 416; Mature: 416
Protein sequence:
>416_residues MIAPEQHLRDPSLSLSTPQATQKLRELIVSRIRAQGPVTFAQFMEWALYEPGLGYYEQGSPIGPDYLTSPHLAADFAQLL AEQILQFWHILGSPPDFKVIEMGAGSGRLAQDWLTYVRSARPAARLREQPSFWQALDYGILERSAHLRRLQQERLAPFGE KVRWLDWDGIPDESVTGCFFSNELVDAFPVHRVQVQDGALREIYVDCSEAAEADFREVLGDLSTPELREYFARLGIPVET YPSGYQTEVNLKALEWLQLLARKLRRGYVLTIDYGHTAQRYYSPHRAQGTLLAYRQHGSYTDPYVRVGSQDLTAHVDFTT LEQVGESLGLRCLGFTRQSSFLVNLGLTERLAALSQMGNPVDGEAVDVGQVLRRRSALHALLDPMGLGGFGVLVQAKGLT PSEYAHPLRGFGEPEL
Sequences:
>Translated_416_residues MIAPEQHLRDPSLSLSTPQATQKLRELIVSRIRAQGPVTFAQFMEWALYEPGLGYYEQGSPIGPDYLTSPHLAADFAQLL AEQILQFWHILGSPPDFKVIEMGAGSGRLAQDWLTYVRSARPAARLREQPSFWQALDYGILERSAHLRRLQQERLAPFGE KVRWLDWDGIPDESVTGCFFSNELVDAFPVHRVQVQDGALREIYVDCSEAAEADFREVLGDLSTPELREYFARLGIPVET YPSGYQTEVNLKALEWLQLLARKLRRGYVLTIDYGHTAQRYYSPHRAQGTLLAYRQHGSYTDPYVRVGSQDLTAHVDFTT LEQVGESLGLRCLGFTRQSSFLVNLGLTERLAALSQMGNPVDGEAVDVGQVLRRRSALHALLDPMGLGGFGVLVQAKGLT PSEYAHPLRGFGEPEL >Mature_416_residues MIAPEQHLRDPSLSLSTPQATQKLRELIVSRIRAQGPVTFAQFMEWALYEPGLGYYEQGSPIGPDYLTSPHLAADFAQLL AEQILQFWHILGSPPDFKVIEMGAGSGRLAQDWLTYVRSARPAARLREQPSFWQALDYGILERSAHLRRLQQERLAPFGE KVRWLDWDGIPDESVTGCFFSNELVDAFPVHRVQVQDGALREIYVDCSEAAEADFREVLGDLSTPELREYFARLGIPVET YPSGYQTEVNLKALEWLQLLARKLRRGYVLTIDYGHTAQRYYSPHRAQGTLLAYRQHGSYTDPYVRVGSQDLTAHVDFTT LEQVGESLGLRCLGFTRQSSFLVNLGLTERLAALSQMGNPVDGEAVDVGQVLRRRSALHALLDPMGLGGFGVLVQAKGLT PSEYAHPLRGFGEPEL
Specific function: Unknown
COG id: COG1565
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21396487, Length=359, Percent_Identity=26.4623955431755, Blast_Score=99, Evalue=9e-21, Organism=Drosophila melanogaster, GI24645885, Length=423, Percent_Identity=28.6052009456265, Blast_Score=126, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46646; Mature: 46646
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAPEQHLRDPSLSLSTPQATQKLRELIVSRIRAQGPVTFAQFMEWALYEPGLGYYEQGS CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCC PIGPDYLTSPHLAADFAQLLAEQILQFWHILGSPPDFKVIEMGAGSGRLAQDWLTYVRSA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCC RPAARLREQPSFWQALDYGILERSAHLRRLQQERLAPFGEKVRWLDWDGIPDESVTGCFF CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEE SNELVDAFPVHRVQVQDGALREIYVDCSEAAEADFREVLGDLSTPELREYFARLGIPVET CCCHHHHCCCEEEEECCCCCHHHEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC YPSGYQTEVNLKALEWLQLLARKLRRGYVLTIDYGHTAQRYYSPHRAQGTLLAYRQHGSY CCCCCCEECHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHCCCCCCCCCEEEEECCCCC TDPYVRVGSQDLTAHVDFTTLEQVGESLGLRCLGFTRQSSFLVNLGLTERLAALSQMGNP CCHHEEECCCCCEEEECHHHHHHHHHHHCCEEEEECCCCCEEEECCHHHHHHHHHHCCCC VDGEAVDVGQVLRRRSALHALLDPMGLGGFGVLVQAKGLTPSEYAHPLRGFGEPEL CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure MIAPEQHLRDPSLSLSTPQATQKLRELIVSRIRAQGPVTFAQFMEWALYEPGLGYYEQGS CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCC PIGPDYLTSPHLAADFAQLLAEQILQFWHILGSPPDFKVIEMGAGSGRLAQDWLTYVRSA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCC RPAARLREQPSFWQALDYGILERSAHLRRLQQERLAPFGEKVRWLDWDGIPDESVTGCFF CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEE SNELVDAFPVHRVQVQDGALREIYVDCSEAAEADFREVLGDLSTPELREYFARLGIPVET CCCHHHHCCCEEEEECCCCCHHHEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC YPSGYQTEVNLKALEWLQLLARKLRRGYVLTIDYGHTAQRYYSPHRAQGTLLAYRQHGSY CCCCCCEECHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHCCCCCCCCCEEEEECCCCC TDPYVRVGSQDLTAHVDFTTLEQVGESLGLRCLGFTRQSSFLVNLGLTERLAALSQMGNP CCHHEEECCCCCEEEECHHHHHHHHHHHCCEEEEECCCCCEEEECCHHHHHHHHHHCCCC VDGEAVDVGQVLRRRSALHALLDPMGLGGFGVLVQAKGLTPSEYAHPLRGFGEPEL CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA