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The map label for this gene is ybbD [H]

Identifier: 86609778

GI number: 86609778

Start: 2443451

End: 2444986

Strand: Direct

Name: ybbD [H]

Synonym: CYB_2338

Alternate gene names: 86609778

Gene position: 2443451-2444986 (Clockwise)

Preceding gene: 86609776

Following gene: 86609783

Centisome position: 80.2

GC content: 61.91

Gene sequence:

>1536_bases
GTGGATCCCAGGGCTTGGAGCCTTGAGGAGAAAGTGGGGCAACTGTTTCTGGTTTATTTTGAGGGAGCTGAGTTTTCCTC
CGCTCTCGAGGAGATGATCCGGGACTACCACGTGGGCGGGCTGATCTTCTATTCGATTGCCGGCAACATTCAAACGTTGC
CTCAGGTGGCCCAGCTCATTGCCGCGGCTCAGGCACAAGCCCTTGTCCCCCTGTGGATAGCCATTGATCAAGAGGGGGGG
CCGGTGGTGCGCCTTACCGAGGGGGTGACGGTGTTCCCCAGCGCCATGGCAGTGGCAGCAGCGGGATCCCTGGCAAAGGC
GGAAGCTATGGCCCGTGCGGTGGGAACGGAGCTGAAAAGTTTGGGGTTTAACCTCAACTTCGCCCCTGTTGTGGACGTGA
ACAGCAACCCCCACAACCCCATCATCGGCATCCGAGCCTTTGGGTCAGACCCGAAACAGGTGACAGATTACGGCCTCGCT
CTGTGGCGCGGCTATCGGCAAGCCGGGATCCTCTGCACGCCCAAACATTTTCCCGGTCATGGGGACACCGATATCGATTC
CCACCTGGGGTTGCCGCGGGTGGATCGTCCCCTGGAGGCGCTACAAACCACGGAATTGCGCCCGTTTCAGGCTTTGATCC
AGGCAGGGGCAGAGGCGGTGATGACGGCGCATGTAGTGATGCCGGCTCTGGGATCCGTGCGACCGGCAACGCTGGCCCCT
GAGGTGGTGTCGGGCTGGCTGCGGCAGAGGCTGGGTTTCCAGGGTCTCGTCCTGACAGATTCCCTGACCATGGGGGCCAT
TGCCCGCACCTACGGCATTCCCGAAGCGGCAGAACTGGCCTTTAGGGCAGGGGCCGATGTGCTGGTGTTTGGGGCAGATC
CCGGCTTTAGCCCGGCCATCCAAAAAGAAGCCTATGCCCATCTGCTGCGGGAGTTCCGTGCCGGTCGTTTGTCGGTTGAG
CAGTTGGATCGGTCAGTGGAGCGAATTTTGACCTTGAAGCGGCGCTACGGATTGGGATCCCCCTGCCCCCCTTTCCCCCC
TGCCGGCTTGGAAAACCACCGGGCACTGGCCCGCCAAATCGCCCAAGACAGCATCACCCTAGTACGGGGATCCCTGCCTC
CCTTGGCCCCTGACCCGCTGCTTATCACCCCTGTACCTTTGTTGGGGGAGCTGCTGCAAAAAGCCTGTCCCGCTGCCCAA
GTGTTCTCCATCCCTCTGGATCCCACCCCCGAACAGCAGCGGATTGCCCAAGAAGGGGCTCAAAGGGCTGCGCAGGTGCT
GGTGGGATCCCTGGAGACGTGGCGGCATCCGGCGCAGAGGTTGCTGCTGGGATCCCTTCCGCCGGAAAAGGTGATTGGGT
TGGCTTTGGGATCCCCCTACGACGCCTTTGCCCTGCCCCAGATCCCGGTCTATTTGGCCTGCTACGGCACTACCCCCGTC
TCTCTACAGGCGTTGCTGCAGGTGTTGTTGGGACAGATCCCGGCCCAGGGTCGCTTGCCGGTTGGATCCCACTTGGAGGG
ATCCTGGTCGCGTTAG

Upstream 100 bases:

>100_bases
TGACCGGCTTTCTTGGCAGCGACGCCCAAGGACATCTGCTTTGACATGCTCGATAGGACTCCGTCCCGCTGACGCGAAAG
GACCCCGTCTCGCTGCCGCA

Downstream 100 bases:

>100_bases
CGGAGCTGATACATTTACGCTGAACACTGCTGAACATCACTGTTCAACTATGCAGCGATAGCATTCTGTTTGTTTCCAAC
CAGAATGGCGGTATCCCGCA

Product: glycosyl hydrolase domain-containing protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 511; Mature: 511

Protein sequence:

>511_residues
MDPRAWSLEEKVGQLFLVYFEGAEFSSALEEMIRDYHVGGLIFYSIAGNIQTLPQVAQLIAAAQAQALVPLWIAIDQEGG
PVVRLTEGVTVFPSAMAVAAAGSLAKAEAMARAVGTELKSLGFNLNFAPVVDVNSNPHNPIIGIRAFGSDPKQVTDYGLA
LWRGYRQAGILCTPKHFPGHGDTDIDSHLGLPRVDRPLEALQTTELRPFQALIQAGAEAVMTAHVVMPALGSVRPATLAP
EVVSGWLRQRLGFQGLVLTDSLTMGAIARTYGIPEAAELAFRAGADVLVFGADPGFSPAIQKEAYAHLLREFRAGRLSVE
QLDRSVERILTLKRRYGLGSPCPPFPPAGLENHRALARQIAQDSITLVRGSLPPLAPDPLLITPVPLLGELLQKACPAAQ
VFSIPLDPTPEQQRIAQEGAQRAAQVLVGSLETWRHPAQRLLLGSLPPEKVIGLALGSPYDAFALPQIPVYLACYGTTPV
SLQALLQVLLGQIPAQGRLPVGSHLEGSWSR

Sequences:

>Translated_511_residues
MDPRAWSLEEKVGQLFLVYFEGAEFSSALEEMIRDYHVGGLIFYSIAGNIQTLPQVAQLIAAAQAQALVPLWIAIDQEGG
PVVRLTEGVTVFPSAMAVAAAGSLAKAEAMARAVGTELKSLGFNLNFAPVVDVNSNPHNPIIGIRAFGSDPKQVTDYGLA
LWRGYRQAGILCTPKHFPGHGDTDIDSHLGLPRVDRPLEALQTTELRPFQALIQAGAEAVMTAHVVMPALGSVRPATLAP
EVVSGWLRQRLGFQGLVLTDSLTMGAIARTYGIPEAAELAFRAGADVLVFGADPGFSPAIQKEAYAHLLREFRAGRLSVE
QLDRSVERILTLKRRYGLGSPCPPFPPAGLENHRALARQIAQDSITLVRGSLPPLAPDPLLITPVPLLGELLQKACPAAQ
VFSIPLDPTPEQQRIAQEGAQRAAQVLVGSLETWRHPAQRLLLGSLPPEKVIGLALGSPYDAFALPQIPVYLACYGTTPV
SLQALLQVLLGQIPAQGRLPVGSHLEGSWSR
>Mature_511_residues
MDPRAWSLEEKVGQLFLVYFEGAEFSSALEEMIRDYHVGGLIFYSIAGNIQTLPQVAQLIAAAQAQALVPLWIAIDQEGG
PVVRLTEGVTVFPSAMAVAAAGSLAKAEAMARAVGTELKSLGFNLNFAPVVDVNSNPHNPIIGIRAFGSDPKQVTDYGLA
LWRGYRQAGILCTPKHFPGHGDTDIDSHLGLPRVDRPLEALQTTELRPFQALIQAGAEAVMTAHVVMPALGSVRPATLAP
EVVSGWLRQRLGFQGLVLTDSLTMGAIARTYGIPEAAELAFRAGADVLVFGADPGFSPAIQKEAYAHLLREFRAGRLSVE
QLDRSVERILTLKRRYGLGSPCPPFPPAGLENHRALARQIAQDSITLVRGSLPPLAPDPLLITPVPLLGELLQKACPAAQ
VFSIPLDPTPEQQRIAQEGAQRAAQVLVGSLETWRHPAQRLLLGSLPPEKVIGLALGSPYDAFALPQIPVYLACYGTTPV
SLQALLQVLLGQIPAQGRLPVGSHLEGSWSR

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=278, Percent_Identity=31.294964028777, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1788453, Length=392, Percent_Identity=24.234693877551, Blast_Score=92, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 54733; Mature: 54733

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPRAWSLEEKVGQLFLVYFEGAEFSSALEEMIRDYHVGGLIFYSIAGNIQTLPQVAQLI
CCCCCCCHHHHHCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHH
AAAQAQALVPLWIAIDQEGGPVVRLTEGVTVFPSAMAVAAAGSLAKAEAMARAVGTELKS
HHHHHHHEEEEEEEEECCCCCEEEEECCCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHH
LGFNLNFAPVVDVNSNPHNPIIGIRAFGSDPKQVTDYGLALWRGYRQAGILCTPKHFPGH
CCCCCCCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCC
GDTDIDSHLGLPRVDRPLEALQTTELRPFQALIQAGAEAVMTAHVVMPALGSVRPATLAP
CCCCHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCH
EVVSGWLRQRLGFQGLVLTDSLTMGAIARTYGIPEAAELAFRAGADVLVFGADPGFSPAI
HHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCCCCHHH
QKEAYAHLLREFRAGRLSVEQLDRSVERILTLKRRYGLGSPCPPFPPAGLENHRALARQI
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
AQDSITLVRGSLPPLAPDPLLITPVPLLGELLQKACPAAQVFSIPLDPTPEQQRIAQEGA
HHHHHHEEECCCCCCCCCCEEEECHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
QRAAQVLVGSLETWRHPAQRLLLGSLPPEKVIGLALGSPYDAFALPQIPVYLACYGTTPV
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCCCCCEEEEEECCCCH
SLQALLQVLLGQIPAQGRLPVGSHLEGSWSR
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDPRAWSLEEKVGQLFLVYFEGAEFSSALEEMIRDYHVGGLIFYSIAGNIQTLPQVAQLI
CCCCCCCHHHHHCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHH
AAAQAQALVPLWIAIDQEGGPVVRLTEGVTVFPSAMAVAAAGSLAKAEAMARAVGTELKS
HHHHHHHEEEEEEEEECCCCCEEEEECCCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHH
LGFNLNFAPVVDVNSNPHNPIIGIRAFGSDPKQVTDYGLALWRGYRQAGILCTPKHFPGH
CCCCCCCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCC
GDTDIDSHLGLPRVDRPLEALQTTELRPFQALIQAGAEAVMTAHVVMPALGSVRPATLAP
CCCCHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCH
EVVSGWLRQRLGFQGLVLTDSLTMGAIARTYGIPEAAELAFRAGADVLVFGADPGFSPAI
HHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCCCCHHH
QKEAYAHLLREFRAGRLSVEQLDRSVERILTLKRRYGLGSPCPPFPPAGLENHRALARQI
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
AQDSITLVRGSLPPLAPDPLLITPVPLLGELLQKACPAAQVFSIPLDPTPEQQRIAQEGA
HHHHHHEEECCCCCCCCCCEEEECHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
QRAAQVLVGSLETWRHPAQRLLLGSLPPEKVIGLALGSPYDAFALPQIPVYLACYGTTPV
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCCCCCEEEEEECCCCH
SLQALLQVLLGQIPAQGRLPVGSHLEGSWSR
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]