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The map label for this gene is ndhC [H]

Identifier: 86609772

GI number: 86609772

Start: 2438815

End: 2439177

Strand: Direct

Name: ndhC [H]

Synonym: CYB_2332

Alternate gene names: 86609772

Gene position: 2438815-2439177 (Clockwise)

Preceding gene: 86609771

Following gene: 86609773

Centisome position: 80.05

GC content: 55.1

Gene sequence:

>363_bases
GTGTTTGTTCTGTCCGGCTACGAGTATTTGCTGGTTTTTCTAATCGTCTGCTCTCTGCTGCCGATTTTGGCTCTGGGGGC
TTCCGCACTCTTAGCGCCAAAGCGGCGGGGATCCCTGCGGCGCAGCACTTACGAGTCGGGCATGGAGCCGTTTGGGCAAG
CCTGGATCCAGTTCAACATTCGCTACTACATGTTCGCACTGGTCTTCGTCATTTTCGACGTAGAGACGGTGTTCCTCTAT
CCCTGGGCAGTGGCGTTTCACCGCTTGGGGCTGTTGGCCTTTGTGGAGGCCCTGATTTTCATCGCCATCCTTGTGGTGGG
TCTTGTGTACGCCTGGAGAAAAGGAGCATTGGAATGGTCATGA

Upstream 100 bases:

>100_bases
TCATCAACAGAACTGAAGATCCCGTGGCGCAGGGGAGCCCCAGACTGGCTCTATACTGGAAACGTATCTAAATGTTGAGC
ACCTGAGGCAGTCTGGCGTC

Downstream 100 bases:

>100_bases
CGTCTGAGAAATCGCAAGTCTTGTTTCCGGGGGCTGCCCCCCAGGTGACTACCGACCTCTCCAACAACGTCGTTCTGACG
ACGGTGAACGACCTGTACAA

Product: NADH dehydrogenase subunit A

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase subunit 3; NADH-plastoquinone oxidoreductase subunit 3; NDH-1 subunit 3; NDH-C [H]

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MFVLSGYEYLLVFLIVCSLLPILALGASALLAPKRRGSLRRSTYESGMEPFGQAWIQFNIRYYMFALVFVIFDVETVFLY
PWAVAFHRLGLLAFVEALIFIAILVVGLVYAWRKGALEWS

Sequences:

>Translated_120_residues
MFVLSGYEYLLVFLIVCSLLPILALGASALLAPKRRGSLRRSTYESGMEPFGQAWIQFNIRYYMFALVFVIFDVETVFLY
PWAVAFHRLGLLAFVEALIFIAILVVGLVYAWRKGALEWS
>Mature_120_residues
MFVLSGYEYLLVFLIVCSLLPILALGASALLAPKRRGSLRRSTYESGMEPFGQAWIQFNIRYYMFALVFVIFDVETVFLY
PWAVAFHRLGLLAFVEALIFIAILVVGLVYAWRKGALEWS

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG0838

COG function: function code C; NADH:ubiquinone oxidoreductase subunit 3 (chain A)

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I subunit 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788625, Length=109, Percent_Identity=39.4495412844037, Blast_Score=79, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023043
- InterPro:   IPR000440 [H]

Pfam domain/function: PF00507 Oxidored_q4 [H]

EC number: 1.6.5.3

Molecular weight: Translated: 13707; Mature: 13707

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVLSGYEYLLVFLIVCSLLPILALGASALLAPKRRGSLRRSTYESGMEPFGQAWIQFNI
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHCCCHHHHHHHHHHH
RYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFVEALIFIAILVVGLVYAWRKGALEWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MFVLSGYEYLLVFLIVCSLLPILALGASALLAPKRRGSLRRSTYESGMEPFGQAWIQFNI
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHCCCHHHHHHHHHHH
RYYMFALVFVIFDVETVFLYPWAVAFHRLGLLAFVEALIFIAILVVGLVYAWRKGALEWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA