| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609742
Identifier: 86609742
GI number: 86609742
Start: 2407449
End: 2409242
Strand: Direct
Name: 86609742
Synonym: CYB_2301
Alternate gene names: NA
Gene position: 2407449-2409242 (Clockwise)
Preceding gene: 86609741
Following gene: 86609743
Centisome position: 79.02
GC content: 62.32
Gene sequence:
>1794_bases ATGGGGCGATTCTTCAATTCCAACCTGGGAGTGGCGCTGTTGGGGAGCAGCATCTTGGCTGCTTTGGTGGGCTGGGCCTT GTCGATCGACATCGAGGAAGTGAAGGTGGAGTCTCCTTCCCCCGATCAGCCCCTCTCGGTCAGCCGCAGGGTAGACATCT TGGGTCGTCGGGGAGGCCATCAGCGTTGGCGGTTGATTGCCGAGCAGGTGGATCTGGCAGCTGGGCAACAGGTATTTGAA CAGGGGGCACACGGCTACTTCTACGGAGAAGGTGCTGACCGGCAAAAAGGGGTGCCGGATCCCTTTTTTGATAGCAGCGA GCAGATGACTTGGCGGGCCAAGCGAGCCCGCTACAATGCCACCGCCGACGAGCTGTATTTGGATGGCGAGGTGGAGGTGA GGAGCGACGACGGCAGCCTGCTCTTGACCAGCGCCCTGAGAGTCACCCCCGAAGAACGCATCGAGGTGGCCGCGGAGTTC ACCCTCAAAGGCCGGGAAATGGTGTTGCAGGGCCGCTCTGGCTCGTTTAACTTTCAATTTGCCCTTCTCAGGGCCGAGCA GGGCAAGCTGATAGTGTTGCCCCCAAACGGCTCGGCACCCACCTCCACCACCATCACCGCCGACCAGATCACCTACGACC GCACCAACCAGGTGGCCGAGGGGAAAGGGAACCTGCGCATTCGCGAACGCGGCATCGAGATTCGCGCTCCCCAAGGCACC TACCTGCGCCAGCAGGCCCAAAGCATTCTCTCCGGCGGTGTGGTGTTACAGGAGGTGGCCGGCGACAGCAGCCGGGATCC CTTGTTGGCGGATCTGCGCTTGGCCCAGGCCTCTCCCGGCCCGGAGGCGACCCCAGACCAACAGGATCAAGAAGTCACCA TCATTGCCGACCGCCTCACGTACGACCGCAACACGCAAATTGCCCAAGGGGAAGGCAACCTGGAGATCCAGCAGGGGGAA ACCATCATCCGGTCGGCCCAGGGCACCTACCGCCGCCGCGAATCCCAAAGTTTGTTGACCGGAGGGGTCACCCTGGAAGA GCCCGGACGGGTGCTCACCTCCGCCCGCCTGGAGGGCAACCACCGCGACAAGATCTTCCTCTTTGAAGACAACGTCCTCT ACCGGCAGATGGCTACCTCCACTCCGGCGCCCAGCGAGGGATCCCTGACAGAGGAGCTGCGCCAAGCCGAAACCGAGGTG CGGGCTGCCCGCCTGGTTTACAACTCCCGCACCGGCACTTCCGAGTTTAGCGATGCCGTCGAGTTCATCCAGCGGGGGCG CAGGGCCAAGGCCAACCAGGCCACCATCACCCCTGAGAAAGTGGAGCTGCGGGGAGAGGTGGTGATCGAGCAGATCGAGG GGGAGTGGCTGGCGCGGCGGCTACAAAACCCGGAGACCCAGGCCGATGTGGATCAGCCGACGGTGATCTACGCCGACCGG GTGGAGATCGACCAAGCCAGCAGCGATGCCCGCTTCTTTGGCAATGTGGTTATTGTGCAGGCCAACCGCGCCATCGAAGG GGATCGCGCCGATTACTTTGACCGAGAACAAATTTTCAAAATCAGCGCCGAACAGGCTCCTGTGGTGCTCTGCGATCGGG GAGAGGTCGGCCGCCTTCCCGGGGAGAGCACCCAAGCTCTGCCGGGCCGCAACGCGCTGGATCAGATGTGCCGGGGCGCC AATCGCCTCAGTGGCAAGCTGGTTACCCTGAACATAAAACAAGATGAATACACCGTCGAAGGGGACAGGCAACAGCAGGG CATGTTTCAGTTTCGCATCACCGACGCCCTCTGA
Upstream 100 bases:
>100_bases GGCAAAATGGGATAAGCTACAGCCTAGAGTGCTAGCTCAGAGCGTTGGCTCCAAGGGGAGTGGTCAGTTCGGGTCGAGGT GAGGCGGCAGCAAGAATAGG
Downstream 100 bases:
>100_bases TGGGATCCCCCCTCGGGGAGCCATCTGTGGTTTTTGATCGTCCAGGTTTGGCTGAGGTTGTGATCCGAGGTGATGTCATG ACGGCTCCACTCGCCGAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 597; Mature: 596
Protein sequence:
>597_residues MGRFFNSNLGVALLGSSILAALVGWALSIDIEEVKVESPSPDQPLSVSRRVDILGRRGGHQRWRLIAEQVDLAAGQQVFE QGAHGYFYGEGADRQKGVPDPFFDSSEQMTWRAKRARYNATADELYLDGEVEVRSDDGSLLLTSALRVTPEERIEVAAEF TLKGREMVLQGRSGSFNFQFALLRAEQGKLIVLPPNGSAPTSTTITADQITYDRTNQVAEGKGNLRIRERGIEIRAPQGT YLRQQAQSILSGGVVLQEVAGDSSRDPLLADLRLAQASPGPEATPDQQDQEVTIIADRLTYDRNTQIAQGEGNLEIQQGE TIIRSAQGTYRRRESQSLLTGGVTLEEPGRVLTSARLEGNHRDKIFLFEDNVLYRQMATSTPAPSEGSLTEELRQAETEV RAARLVYNSRTGTSEFSDAVEFIQRGRRAKANQATITPEKVELRGEVVIEQIEGEWLARRLQNPETQADVDQPTVIYADR VEIDQASSDARFFGNVVIVQANRAIEGDRADYFDREQIFKISAEQAPVVLCDRGEVGRLPGESTQALPGRNALDQMCRGA NRLSGKLVTLNIKQDEYTVEGDRQQQGMFQFRITDAL
Sequences:
>Translated_597_residues MGRFFNSNLGVALLGSSILAALVGWALSIDIEEVKVESPSPDQPLSVSRRVDILGRRGGHQRWRLIAEQVDLAAGQQVFE QGAHGYFYGEGADRQKGVPDPFFDSSEQMTWRAKRARYNATADELYLDGEVEVRSDDGSLLLTSALRVTPEERIEVAAEF TLKGREMVLQGRSGSFNFQFALLRAEQGKLIVLPPNGSAPTSTTITADQITYDRTNQVAEGKGNLRIRERGIEIRAPQGT YLRQQAQSILSGGVVLQEVAGDSSRDPLLADLRLAQASPGPEATPDQQDQEVTIIADRLTYDRNTQIAQGEGNLEIQQGE TIIRSAQGTYRRRESQSLLTGGVTLEEPGRVLTSARLEGNHRDKIFLFEDNVLYRQMATSTPAPSEGSLTEELRQAETEV RAARLVYNSRTGTSEFSDAVEFIQRGRRAKANQATITPEKVELRGEVVIEQIEGEWLARRLQNPETQADVDQPTVIYADR VEIDQASSDARFFGNVVIVQANRAIEGDRADYFDREQIFKISAEQAPVVLCDRGEVGRLPGESTQALPGRNALDQMCRGA NRLSGKLVTLNIKQDEYTVEGDRQQQGMFQFRITDAL >Mature_596_residues GRFFNSNLGVALLGSSILAALVGWALSIDIEEVKVESPSPDQPLSVSRRVDILGRRGGHQRWRLIAEQVDLAAGQQVFEQ GAHGYFYGEGADRQKGVPDPFFDSSEQMTWRAKRARYNATADELYLDGEVEVRSDDGSLLLTSALRVTPEERIEVAAEFT LKGREMVLQGRSGSFNFQFALLRAEQGKLIVLPPNGSAPTSTTITADQITYDRTNQVAEGKGNLRIRERGIEIRAPQGTY LRQQAQSILSGGVVLQEVAGDSSRDPLLADLRLAQASPGPEATPDQQDQEVTIIADRLTYDRNTQIAQGEGNLEIQQGET IIRSAQGTYRRRESQSLLTGGVTLEEPGRVLTSARLEGNHRDKIFLFEDNVLYRQMATSTPAPSEGSLTEELRQAETEVR AARLVYNSRTGTSEFSDAVEFIQRGRRAKANQATITPEKVELRGEVVIEQIEGEWLARRLQNPETQADVDQPTVIYADRV EIDQASSDARFFGNVVIVQANRAIEGDRADYFDREQIFKISAEQAPVVLCDRGEVGRLPGESTQALPGRNALDQMCRGAN RLSGKLVTLNIKQDEYTVEGDRQQQGMFQFRITDAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66119; Mature: 65987
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRFFNSNLGVALLGSSILAALVGWALSIDIEEVKVESPSPDQPLSVSRRVDILGRRGGH CCCEECCCCCHHHHHHHHHHHHHHHHEEEEHHHEEECCCCCCCCCCHHHHHHHHCCCCCH QRWRLIAEQVDLAAGQQVFEQGAHGYFYGEGADRQKGVPDPFFDSSEQMTWRAKRARYNA HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC TADELYLDGEVEVRSDDGSLLLTSALRVTPEERIEVAAEFTLKGREMVLQGRSGSFNFQF CHHHEEECCEEEEECCCCCEEEEHHHHCCCHHHHEEEEEEEECCCEEEEECCCCCCEEEE ALLRAEQGKLIVLPPNGSAPTSTTITADQITYDRTNQVAEGKGNLRIRERGIEIRAPQGT EEEEECCCCEEEECCCCCCCCCCEEEECCEEECCCCCCCCCCCCEEEEECCEEEECCCCH YLRQQAQSILSGGVVLQEVAGDSSRDPLLADLRLAQASPGPEATPDQQDQEVTIIADRLT HHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEE YDRNTQIAQGEGNLEIQQGETIIRSAQGTYRRRESQSLLTGGVTLEEPGRVLTSARLEGN CCCCCEEECCCCCEEEECCCHHHHHCCCHHHHHHCCHHEECCEEECCCCCEEEEHCCCCC HRDKIFLFEDNVLYRQMATSTPAPSEGSLTEELRQAETEVRAARLVYNSRTGTSEFSDAV CCCEEEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHH EFIQRGRRAKANQATITPEKVELRGEVVIEQIEGEWLARRLQNPETQADVDQPTVIYADR HHHHCCCCCCCCCCCCCHHHHEECCEEEEEHHCHHHHHHHHCCCCCCCCCCCCEEEEEEC VEIDQASSDARFFGNVVIVQANRAIEGDRADYFDREQIFKISAEQAPVVLCDRGEVGRLP EEECCCCCCCEEECCEEEEEECCCCCCCCCCCCCCHHHEEEECCCCCEEEECCCCCCCCC GESTQALPGRNALDQMCRGANRLSGKLVTLNIKQDEYTVEGDRQQQGMFQFRITDAL CCCCCCCCCCHHHHHHHCCCHHCCCEEEEEEEECCCEEECCCCCCCCEEEEEEECCC >Mature Secondary Structure GRFFNSNLGVALLGSSILAALVGWALSIDIEEVKVESPSPDQPLSVSRRVDILGRRGGH CCEECCCCCHHHHHHHHHHHHHHHHEEEEHHHEEECCCCCCCCCCHHHHHHHHCCCCCH QRWRLIAEQVDLAAGQQVFEQGAHGYFYGEGADRQKGVPDPFFDSSEQMTWRAKRARYNA HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC TADELYLDGEVEVRSDDGSLLLTSALRVTPEERIEVAAEFTLKGREMVLQGRSGSFNFQF CHHHEEECCEEEEECCCCCEEEEHHHHCCCHHHHEEEEEEEECCCEEEEECCCCCCEEEE ALLRAEQGKLIVLPPNGSAPTSTTITADQITYDRTNQVAEGKGNLRIRERGIEIRAPQGT EEEEECCCCEEEECCCCCCCCCCEEEECCEEECCCCCCCCCCCCEEEEECCEEEECCCCH YLRQQAQSILSGGVVLQEVAGDSSRDPLLADLRLAQASPGPEATPDQQDQEVTIIADRLT HHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEE YDRNTQIAQGEGNLEIQQGETIIRSAQGTYRRRESQSLLTGGVTLEEPGRVLTSARLEGN CCCCCEEECCCCCEEEECCCHHHHHCCCHHHHHHCCHHEECCEEECCCCCEEEEHCCCCC HRDKIFLFEDNVLYRQMATSTPAPSEGSLTEELRQAETEVRAARLVYNSRTGTSEFSDAV CCCEEEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHH EFIQRGRRAKANQATITPEKVELRGEVVIEQIEGEWLARRLQNPETQADVDQPTVIYADR HHHHCCCCCCCCCCCCCHHHHEECCEEEEEHHCHHHHHHHHCCCCCCCCCCCCEEEEEEC VEIDQASSDARFFGNVVIVQANRAIEGDRADYFDREQIFKISAEQAPVVLCDRGEVGRLP EEECCCCCCCEEECCEEEEEECCCCCCCCCCCCCCHHHEEEECCCCCEEEECCCCCCCCC GESTQALPGRNALDQMCRGANRLSGKLVTLNIKQDEYTVEGDRQQQGMFQFRITDAL CCCCCCCCCCHHHHHHHCCCHHCCCEEEEEEEECCCEEECCCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA