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The map label for this gene is psbC [H]

Identifier: 86609710

GI number: 86609710

Start: 2373428

End: 2374462

Strand: Reverse

Name: psbC [H]

Synonym: CYB_2268

Alternate gene names: 86609710

Gene position: 2374462-2373428 (Counterclockwise)

Preceding gene: 86609713

Following gene: 86609709

Centisome position: 77.94

GC content: 58.36

Gene sequence:

>1035_bases
ATGACAGCGACGACACTCAAGCAAGAAGGGGGATCTAGCTCGCAACAACAGATCCCGTGGTGGGCGGGCAACGCCCGTTT
GACCGATCTTTCTGGCCGGCTGCTGGGGGCGCATGTGGCCCATGCCGGGCTGATCGTTCTCTGGGCAGGGGCGATGACCC
TGATCGAGTTGGCCAAGTTTGACCCCAGCCGACCGATGTATGAGCAGGGGCTGATTCTCTTGCCCCACCTGGCCAGCTTG
GGGCTGGGGGTGGGATCCGGCGGGGAAGTCCTGGATACGGATATCTACTTTGCGGTGGGAGCGATCCACCTCATCAGCTC
TGCCTTTTTGGGGTTTGGCGGCATTTTTCATGCCCTGCGCGGGCCGGCGGTGCTGGATCCCAAAGCCTTTCCCCTGTTTA
GCTACGACTGGCAAGACAAAAACAAGATGACCACCATCCTAGGGATCCACCTGGTGCTGCTGGGATTGGGAGCCTGGCTT
TTGGTGCTCAAGGCAGTGGTGTTTGGCGGCTTGTTCGACCCGGTGGCAGGAGAGGTGCGCCTGGTGTCTCCCAACTGGAA
CCCCTTTGGCCACCTGTTGGGCATAGAAGGGCGCCACTGGATCGCCGGGGTGGACACTTTAGAAGACGTGGTGGGCGGCC
ACCTCTGGCTGGGCTTGCTCCTGGTGTCAGGTGGGGTTTGGCATATCGCGACCAAGCCTTTTGCCTGGGCAGAACGGATT
TTTATCTGGTCTGGGGAAGCTTATCTTTCCTACAGCTTGGGAGCTTTGGCCTTGATGGGATTTATTGCCGCCTATTTCGT
TGCCGTTAACCCAGTGGTCTATCCCGAAGTTTTCTATGGGCCGCTGCTGCAGGTGGGCTTGGATCGCTATCCCTTTTTTG
AGCAAGGAGAGGCTCTCACGTCTAGGGTTTGGCTGGCCAATGCCCACTTTTGGCTGGCCTTTTTCTTCCTTCAGGGCCAC
CTTTTCCATGCCCTGAAAGCCCGAGGATTCAATTTCCGTACCGGCAGAGTAGAGCTCGCTGCACAGCAGGCCTAA

Upstream 100 bases:

>100_bases
TGTCTCGAAAGGATGTGTCCGTGCGGCCAGAGGCGGGCCTGGGGCAAGGTCTCTGGCCTTTTCCTAGAAAAGCTTGTTTA
GAAACGCAAGAGGAGCGGAG

Downstream 100 bases:

>100_bases
CGGCACGCTGAAGGCATTGACTATCTAGCCATCTGATTTTGAGCTTCGCACTTGCAGTTTCGAGGTAGGAGCAATGGCAA
AAATAGGTCTATTTTTCGGC

Product: PsbB/PsbC family photosystem II protein

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MTATTLKQEGGSSSQQQIPWWAGNARLTDLSGRLLGAHVAHAGLIVLWAGAMTLIELAKFDPSRPMYEQGLILLPHLASL
GLGVGSGGEVLDTDIYFAVGAIHLISSAFLGFGGIFHALRGPAVLDPKAFPLFSYDWQDKNKMTTILGIHLVLLGLGAWL
LVLKAVVFGGLFDPVAGEVRLVSPNWNPFGHLLGIEGRHWIAGVDTLEDVVGGHLWLGLLLVSGGVWHIATKPFAWAERI
FIWSGEAYLSYSLGALALMGFIAAYFVAVNPVVYPEVFYGPLLQVGLDRYPFFEQGEALTSRVWLANAHFWLAFFFLQGH
LFHALKARGFNFRTGRVELAAQQA

Sequences:

>Translated_344_residues
MTATTLKQEGGSSSQQQIPWWAGNARLTDLSGRLLGAHVAHAGLIVLWAGAMTLIELAKFDPSRPMYEQGLILLPHLASL
GLGVGSGGEVLDTDIYFAVGAIHLISSAFLGFGGIFHALRGPAVLDPKAFPLFSYDWQDKNKMTTILGIHLVLLGLGAWL
LVLKAVVFGGLFDPVAGEVRLVSPNWNPFGHLLGIEGRHWIAGVDTLEDVVGGHLWLGLLLVSGGVWHIATKPFAWAERI
FIWSGEAYLSYSLGALALMGFIAAYFVAVNPVVYPEVFYGPLLQVGLDRYPFFEQGEALTSRVWLANAHFWLAFFFLQGH
LFHALKARGFNFRTGRVELAAQQA
>Mature_343_residues
TATTLKQEGGSSSQQQIPWWAGNARLTDLSGRLLGAHVAHAGLIVLWAGAMTLIELAKFDPSRPMYEQGLILLPHLASLG
LGVGSGGEVLDTDIYFAVGAIHLISSAFLGFGGIFHALRGPAVLDPKAFPLFSYDWQDKNKMTTILGIHLVLLGLGAWLL
VLKAVVFGGLFDPVAGEVRLVSPNWNPFGHLLGIEGRHWIAGVDTLEDVVGGHLWLGLLLVSGGVWHIATKPFAWAERIF
IWSGEAYLSYSLGALALMGFIAAYFVAVNPVVYPEVFYGPLLQVGLDRYPFFEQGEALTSRVWLANAHFWLAFFFLQGHL
FHALKARGFNFRTGRVELAAQQA

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 37477; Mature: 37346

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATTLKQEGGSSSQQQIPWWAGNARLTDLSGRLLGAHVAHAGLIVLWAGAMTLIELAKF
CCCCCCCCCCCCCCCCCCCEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DPSRPMYEQGLILLPHLASLGLGVGSGGEVLDTDIYFAVGAIHLISSAFLGFGGIFHALR
CCCCCHHHCCCEEEECHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GPAVLDPKAFPLFSYDWQDKNKMTTILGIHLVLLGLGAWLLVLKAVVFGGLFDPVAGEVR
CCCEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
LVSPNWNPFGHLLGIEGRHWIAGVDTLEDVVGGHLWLGLLLVSGGVWHIATKPFAWAERI
EECCCCCCCCEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHEEEE
FIWSGEAYLSYSLGALALMGFIAAYFVAVNPVVYPEVFYGPLLQVGLDRYPFFEQGEALT
EEECCCHHEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHCCHHHH
SRVWLANAHFWLAFFFLQGHLFHALKARGFNFRTGRVELAAQQA
HHHEEECHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEEEECCC
>Mature Secondary Structure 
TATTLKQEGGSSSQQQIPWWAGNARLTDLSGRLLGAHVAHAGLIVLWAGAMTLIELAKF
CCCCCCCCCCCCCCCCCCEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DPSRPMYEQGLILLPHLASLGLGVGSGGEVLDTDIYFAVGAIHLISSAFLGFGGIFHALR
CCCCCHHHCCCEEEECHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GPAVLDPKAFPLFSYDWQDKNKMTTILGIHLVLLGLGAWLLVLKAVVFGGLFDPVAGEVR
CCCEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
LVSPNWNPFGHLLGIEGRHWIAGVDTLEDVVGGHLWLGLLLVSGGVWHIATKPFAWAERI
EECCCCCCCCEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHEEEE
FIWSGEAYLSYSLGALALMGFIAAYFVAVNPVVYPEVFYGPLLQVGLDRYPFFEQGEALT
EEECCCHHEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHCCHHHH
SRVWLANAHFWLAFFFLQGHLFHALKARGFNFRTGRVELAAQQA
HHHEEECHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3138165 [H]