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The map label for this gene is ybiX [C]

Identifier: 86609713

GI number: 86609713

Start: 2377501

End: 2378175

Strand: Reverse

Name: ybiX [C]

Synonym: CYB_2270

Alternate gene names: 86609713

Gene position: 2378175-2377501 (Counterclockwise)

Preceding gene: 86609715

Following gene: 86609710

Centisome position: 78.06

GC content: 50.52

Gene sequence:

>675_bases
ATGATCTTGTGTATTGGCGATGTTCTTAGTTTAGCAGAATTGCAACAGATTCTGTCCCTCATAGCCGATGCTGAATTTGT
GGATGGTGCTCTGACGGCAGGCTGGAATGCCAGGCTTGTCAAAAACAATAGGCAAATGCCAAAGGGATCCCTTCAGCAAC
GGAAGATAGAGGAGATTATCTTGGCAGCTCTAGAGCGTAATTTGTTGTTCCAGATGGCTGCCCGGCCCAAGCTCATTCAT
TCCATTTTAATTAGCTGCTACGAAGCGGGAATGTCCTATGGCACTCATACCGACGATGCGCTGATGCTCGATCGGCATCA
GCTGATGCGCACGGATATTTCCTTTACGCTATTTCTAAGTGCCCCTGAAGACTATGATGGCGGTGAGCTGAAGATCGAGA
GTAGCGAGGGGGAGCAAGCCTACAAGCTGCCGGCGGGTGCTTTGATCCTCTATCCTGCTTCCACCTTGCACCGAGTTGAG
CCTGTAACCCGTGGGATCCGCTATGCTGCCGTCAGTTGGGTTCAAAGCCTAATTAGGGATCCGCAAGAACGCGAGATCCT
CTTTGATTTACAGACTGTGCGGCAGCAGATGTTTCAGGAATCGGGCAAGACACGCCACTTTGATTTGATCTCCAAAGTTT
ACGCGAACCTGCTGCGGAAATGGGCAGAGCTCTAG

Upstream 100 bases:

>100_bases
CTTAAGGTTTCCGAGGGATGCTCGAAGTAGGCATGATTTTCATAAGGCTTGTTTTGCTAGTGTAGAAGGTGTCATGTATT
TTGCTTTTTAGAGGTTGATA

Downstream 100 bases:

>100_bases
AGGGATCGAAGAAAATAGAGCAGGGCTTCTCTGTCTTCAGCAGCCATATTTTTAAAGATCTCGCGGGAGCGTTCAGCTTC
TCCCCCATGCCAGAGAATGG

Product: hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MILCIGDVLSLAELQQILSLIADAEFVDGALTAGWNARLVKNNRQMPKGSLQQRKIEEIILAALERNLLFQMAARPKLIH
SILISCYEAGMSYGTHTDDALMLDRHQLMRTDISFTLFLSAPEDYDGGELKIESSEGEQAYKLPAGALILYPASTLHRVE
PVTRGIRYAAVSWVQSLIRDPQEREILFDLQTVRQQMFQESGKTRHFDLISKVYANLLRKWAEL

Sequences:

>Translated_224_residues
MILCIGDVLSLAELQQILSLIADAEFVDGALTAGWNARLVKNNRQMPKGSLQQRKIEEIILAALERNLLFQMAARPKLIH
SILISCYEAGMSYGTHTDDALMLDRHQLMRTDISFTLFLSAPEDYDGGELKIESSEGEQAYKLPAGALILYPASTLHRVE
PVTRGIRYAAVSWVQSLIRDPQEREILFDLQTVRQQMFQESGKTRHFDLISKVYANLLRKWAEL
>Mature_224_residues
MILCIGDVLSLAELQQILSLIADAEFVDGALTAGWNARLVKNNRQMPKGSLQQRKIEEIILAALERNLLFQMAARPKLIH
SILISCYEAGMSYGTHTDDALMLDRHQLMRTDISFTLFLSAPEDYDGGELKIESSEGEQAYKLPAGALILYPASTLHRVE
PVTRGIRYAAVSWVQSLIRDPQEREILFDLQTVRQQMFQESGKTRHFDLISKVYANLLRKWAEL

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=225, Percent_Identity=39.5555555555556, Blast_Score=167, Evalue=7e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2270_SYNJB (Q2JHA7)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_478475.1
- ProteinModelPortal:   Q2JHA7
- STRING:   Q2JHA7
- GeneID:   3900552
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_2270
- TIGR:   CYB_2270
- eggNOG:   COG3128
- HOGENOM:   HBG285605
- OMA:   ADWADGK
- PhylomeDB:   Q2JHA7
- ProtClustDB:   PRK05467
- BioCyc:   SSP321332:CYB_2270-MONOMER
- HAMAP:   MF_00657
- InterPro:   IPR005123
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: PF03171 2OG-FeII_Oxy

EC number: 1.14.11.- [C]

Molecular weight: Translated: 25378; Mature: 25378

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 167-167

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILCIGDVLSLAELQQILSLIADAEFVDGALTAGWNARLVKNNRQMPKGSLQQRKIEEII
CEEEHHHHHHHHHHHHHHHHHHCHHHHCCHHCCCCCCEEECCCCCCCCCHHHHHHHHHHH
LAALERNLLFQMAARPKLIHSILISCYEAGMSYGTHTDDALMLDRHQLMRTDISFTLFLS
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
APEDYDGGELKIESSEGEQAYKLPAGALILYPASTLHRVEPVTRGIRYAAVSWVQSLIRD
CCCCCCCCEEEEECCCCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PQEREILFDLQTVRQQMFQESGKTRHFDLISKVYANLLRKWAEL
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MILCIGDVLSLAELQQILSLIADAEFVDGALTAGWNARLVKNNRQMPKGSLQQRKIEEII
CEEEHHHHHHHHHHHHHHHHHHCHHHHCCHHCCCCCCEEECCCCCCCCCHHHHHHHHHHH
LAALERNLLFQMAARPKLIHSILISCYEAGMSYGTHTDDALMLDRHQLMRTDISFTLFLS
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
APEDYDGGELKIESSEGEQAYKLPAGALILYPASTLHRVEPVTRGIRYAAVSWVQSLIRD
CCCCCCCCEEEEECCCCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PQEREILFDLQTVRQQMFQESGKTRHFDLISKVYANLLRKWAEL
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA