| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609690
Identifier: 86609690
GI number: 86609690
Start: 2353110
End: 2353625
Strand: Direct
Name: 86609690
Synonym: CYB_2248
Alternate gene names: NA
Gene position: 2353110-2353625 (Clockwise)
Preceding gene: 86609689
Following gene: 86609695
Centisome position: 77.24
GC content: 60.47
Gene sequence:
>516_bases ATGACTGTTGCCTTTTCCTACCCGATCTTCGGCCCCAGCATTCAGTGCCCCCACTGTCGGCAAACGATTGCGGCCCTCAC CCTGACCGATACCTACCTCTGCCCTCGCCATGGTGCATTTGAGGCGGATGCCGAACAAGAGGAGCTGGTACACCTGCAAT CCGGACGGCGCTGGCGCTTTTGGGAAGGTCGCTGGTTTCGTCAGCACACCCACGCCGATGGGATCCGTTTTGAGATTCAT GAAGAATTGGATCGGCTGCGCATGCAAGGAATGCGAGCCACTCAGGTGATCGTGGCCGAGCGCTACCGCCAGCTGCTCAC CCCTTATCTGGAGCAGGGATCCCACCGTCGCCCCGGCCCACCTCGCCTCTATGGCTTGCCCGTCAGCTTCAGCTCCCAAA TCCCAGAGGATAGGGGTGGATCCCCTCAGCGCTGGCGGGTGATCAACTTTGAGCTGACCTACGAGATCGACCCGGCCATG CGGCAGCCGCAATCCCGTCTGCAACTGTGTGATTAG
Upstream 100 bases:
>100_bases CTCCTCCGGTTTTGTCATGGGGATCCCCAAAAGGCAACATCTATAATGTGGACAACTGCGGATTTGCCCAGATATCCAGC CGCGTTTTGTGGGGTTTCCT
Downstream 100 bases:
>100_bases ACTGTGTGATTAGAAAGGCGAACAGGTAGAGAGCTGTTGGAAAATTGGTGGCTGCTCAAGTCTTCTAGGTTGTGTTGATC TTTCATTTGAGCCAAAAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MTVAFSYPIFGPSIQCPHCRQTIAALTLTDTYLCPRHGAFEADAEQEELVHLQSGRRWRFWEGRWFRQHTHADGIRFEIH EELDRLRMQGMRATQVIVAERYRQLLTPYLEQGSHRRPGPPRLYGLPVSFSSQIPEDRGGSPQRWRVINFELTYEIDPAM RQPQSRLQLCD
Sequences:
>Translated_171_residues MTVAFSYPIFGPSIQCPHCRQTIAALTLTDTYLCPRHGAFEADAEQEELVHLQSGRRWRFWEGRWFRQHTHADGIRFEIH EELDRLRMQGMRATQVIVAERYRQLLTPYLEQGSHRRPGPPRLYGLPVSFSSQIPEDRGGSPQRWRVINFELTYEIDPAM RQPQSRLQLCD >Mature_170_residues TVAFSYPIFGPSIQCPHCRQTIAALTLTDTYLCPRHGAFEADAEQEELVHLQSGRRWRFWEGRWFRQHTHADGIRFEIHE ELDRLRMQGMRATQVIVAERYRQLLTPYLEQGSHRRPGPPRLYGLPVSFSSQIPEDRGGSPQRWRVINFELTYEIDPAMR QPQSRLQLCD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20094; Mature: 19963
Theoretical pI: Translated: 8.00; Mature: 8.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVAFSYPIFGPSIQCPHCRQTIAALTLTDTYLCPRHGAFEADAEQEELVHLQSGRRWRF CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHCCCCEEEE WEGRWFRQHTHADGIRFEIHEELDRLRMQGMRATQVIVAERYRQLLTPYLEQGSHRRPGP ECCCHHHHCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC PRLYGLPVSFSSQIPEDRGGSPQRWRVINFELTYEIDPAMRQPQSRLQLCD CCEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEEECHHHCCCHHHCCCCC >Mature Secondary Structure TVAFSYPIFGPSIQCPHCRQTIAALTLTDTYLCPRHGAFEADAEQEELVHLQSGRRWRF EEEEECCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHCCCCEEEE WEGRWFRQHTHADGIRFEIHEELDRLRMQGMRATQVIVAERYRQLLTPYLEQGSHRRPGP ECCCHHHHCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC PRLYGLPVSFSSQIPEDRGGSPQRWRVINFELTYEIDPAMRQPQSRLQLCD CCEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEEECHHHCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA