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The map label for this gene is psaD [H]

Identifier: 86609695

GI number: 86609695

Start: 2356577

End: 2357002

Strand: Direct

Name: psaD [H]

Synonym: CYB_2253

Alternate gene names: 86609695

Gene position: 2356577-2357002 (Clockwise)

Preceding gene: 86609690

Following gene: 86609697

Centisome position: 77.35

GC content: 55.87

Gene sequence:

>426_bases
ATGGAAGGCGATCCTCGTCAGGGAGCAAAGCTGCCTCTATTTGGGGGATCCACCGGAGGGCTGTTGAGCGCAGCCGAAAC
CGAAGAAAAATACGTCATTACCTGGACGGGCAAGCCGGGGCAGGTGTTTGAAATGCCCACCGGCGGCGCTGCCGAAATGG
TGGAAGGCAAAAACTTTCTCACCTTTGCCCGCAAAGAGCAGTGTTTGGCGCTGGGTGCCCAGTTGAGATCCGACTACAAG
ATCAACGACTACCAGATCTTCCGCATTCCGGCGGGTGGAGAGCCTGTGTTGGTGCATCCCAAAGATGGCGTTTTTCCTGA
GAAGGTCAACGAAGGCCGTGAGCCCGTCGGCAAAGTGGATCGCAACATCGGCAAAAACAAAGAGCCGATTACCTACAAGT
TCACCGGCGGGAAACCCTGGGACTAA

Upstream 100 bases:

>100_bases
TCAGTGGTAGATTCAAAGTGCTTCGCGCCGCAAACCGCGGTTTGGACAAGGCAAACCACCGCAAACCACAACGAGTTGAG
AAAGGTAGACTATGGCTGTG

Downstream 100 bases:

>100_bases
GTCCAGCGGCCCTTGTCTTGTCGGATCCCCTGGTCAATTCAGGGGATCTTTATTTGTTCGCGGGCACCTGGTTCTGGAGC
GGTTGCCGACGGCCCTCACC

Product: photosystem I reaction center subunit II

Products: NA

Alternate protein names: Photosystem I 16 kDa polypeptide; PSI-D [H]

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MEGDPRQGAKLPLFGGSTGGLLSAAETEEKYVITWTGKPGQVFEMPTGGAAEMVEGKNFLTFARKEQCLALGAQLRSDYK
INDYQIFRIPAGGEPVLVHPKDGVFPEKVNEGREPVGKVDRNIGKNKEPITYKFTGGKPWD

Sequences:

>Translated_141_residues
MEGDPRQGAKLPLFGGSTGGLLSAAETEEKYVITWTGKPGQVFEMPTGGAAEMVEGKNFLTFARKEQCLALGAQLRSDYK
INDYQIFRIPAGGEPVLVHPKDGVFPEKVNEGREPVGKVDRNIGKNKEPITYKFTGGKPWD
>Mature_141_residues
MEGDPRQGAKLPLFGGSTGGLLSAAETEEKYVITWTGKPGQVFEMPTGGAAEMVEGKNFLTFARKEQCLALGAQLRSDYK
INDYQIFRIPAGGEPVLVHPKDGVFPEKVNEGREPVGKVDRNIGKNKEPITYKFTGGKPWD

Specific function: PsaD can form complexes with ferredoxin and ferredoxin- oxidoreductase in photosystem I (PS I) reaction center [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psaD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003685 [H]

Pfam domain/function: PF02531 PsaD [H]

EC number: NA

Molecular weight: Translated: 15400; Mature: 15400

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGDPRQGAKLPLFGGSTGGLLSAAETEEKYVITWTGKPGQVFEMPTGGAAEMVEGKNFL
CCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCEEEECCCCCCCEEECCCCEE
TFARKEQCLALGAQLRSDYKINDYQIFRIPAGGEPVLVHPKDGVFPEKVNEGREPVGKVD
EEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHCCCCCCHHHHH
RNIGKNKEPITYKFTGGKPWD
HHCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MEGDPRQGAKLPLFGGSTGGLLSAAETEEKYVITWTGKPGQVFEMPTGGAAEMVEGKNFL
CCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCEEEECCCCCCCEEECCCCEE
TFARKEQCLALGAQLRSDYKINDYQIFRIPAGGEPVLVHPKDGVFPEKVNEGREPVGKVD
EEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHCCCCCCHHHHH
RNIGKNKEPITYKFTGGKPWD
HHCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8486290; 1946334; 2119498 [H]