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The map label for this gene is apcB-2 [H]

Identifier: 86609657

GI number: 86609657

Start: 2319673

End: 2320176

Strand: Reverse

Name: apcB-2 [H]

Synonym: CYB_2211

Alternate gene names: 86609657

Gene position: 2320176-2319673 (Counterclockwise)

Preceding gene: 86609658

Following gene: 86609655

Centisome position: 76.15

GC content: 57.74

Gene sequence:

>504_bases
ATGCGGGATGCCGTAACCACGCTGATCAAAACCTACGACCTGACGGGCCGCTACTTGGATCGGGAGGCAATGGATGCGCT
CAAGGCTTTTTATGACTCGGGGCTGCGGCGCATCAAGGCCGTGAACGTGATCAATCTCAACTCAGTGGATATCGTCAAAA
CGGCTGCTGCGGCCATGTTCGCCCAGGTGCCAGATCTCATCCGTCCGGGAGGCAACGCCTACACCACCCGCCGCTACGCC
ACCTGTTTGCGGGATATGGACTACTTCTTGCGCTACGCTTCCTACGCGCTGGTGGCTGCCGACAACAGCATTTTGGATGA
GCGAGTCTTGGCCGGCTTACGGGAGACCTACAACTCCCTCGGTGTGCCCATCGCCCCGACGGTGATTGGCATTCAAAACA
TGAAAACCCGCACCCTGGAGCTGCTTGGCTCCGGCGAAGACTATAGCTTTGTGGCCGAGCCCTTCGATTACCTGAGCGCT
AAGCTGAGCGAAACCGATATCTAA

Upstream 100 bases:

>100_bases
TTCCAAGGTTGACCTTTGGATGTTGTCCGGCAAAATCTCTTCTCATTTTTTCATCTCAAGCTACTTTACAAAATAAAGTC
ACAAGAATGGAGCTGGGGAT

Downstream 100 bases:

>100_bases
ACCGATATCTAAGCGCCTGCTCTTATTCGTCGGCATAGGGGTTTGGCGGCACCGGTATCGGCTCCACCTGCTCGGCAGCG
ATTACCAACTGAGATTGGCC

Product: allophycocyanin, beta subunit

Products: NA

Alternate protein names: Allophycocyanin subunit B18 [H]

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MRDAVTTLIKTYDLTGRYLDREAMDALKAFYDSGLRRIKAVNVINLNSVDIVKTAAAAMFAQVPDLIRPGGNAYTTRRYA
TCLRDMDYFLRYASYALVAADNSILDERVLAGLRETYNSLGVPIAPTVIGIQNMKTRTLELLGSGEDYSFVAEPFDYLSA
KLSETDI

Sequences:

>Translated_167_residues
MRDAVTTLIKTYDLTGRYLDREAMDALKAFYDSGLRRIKAVNVINLNSVDIVKTAAAAMFAQVPDLIRPGGNAYTTRRYA
TCLRDMDYFLRYASYALVAADNSILDERVLAGLRETYNSLGVPIAPTVIGIQNMKTRTLELLGSGEDYSFVAEPFDYLSA
KLSETDI
>Mature_167_residues
MRDAVTTLIKTYDLTGRYLDREAMDALKAFYDSGLRRIKAVNVINLNSVDIVKTAAAAMFAQVPDLIRPGGNAYTTRRYA
TCLRDMDYFLRYASYALVAADNSILDERVLAGLRETYNSLGVPIAPTVIGIQNMKTRTLELLGSGEDYSFVAEPFDYLSA
KLSETDI

Specific function: A variant beta-allophycocyanin (AP) which forms a complex with ApcE, a phycobilisome terminal emmiter that influences energy transfer to photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006245
- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 18568; Mature: 18568

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDAVTTLIKTYDLTGRYLDREAMDALKAFYDSGLRRIKAVNVINLNSVDIVKTAAAAMF
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHH
AQVPDLIRPGGNAYTTRRYATCLRDMDYFLRYASYALVAADNSILDERVLAGLRETYNSL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHC
GVPIAPTVIGIQNMKTRTLELLGSGEDYSFVAEPFDYLSAKLSETDI
CCCCCHHHHHHCCCHHHHHHHHCCCCCCCHHHCHHHHHHHHHHCCCC
>Mature Secondary Structure
MRDAVTTLIKTYDLTGRYLDREAMDALKAFYDSGLRRIKAVNVINLNSVDIVKTAAAAMF
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHH
AQVPDLIRPGGNAYTTRRYATCLRDMDYFLRYASYALVAADNSILDERVLAGLRETYNSL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHC
GVPIAPTVIGIQNMKTRTLELLGSGEDYSFVAEPFDYLSAKLSETDI
CCCCCHHHHHHCCCHHHHHHHHCCCCCCCHHHCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]