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The map label for this gene is potC [H]

Identifier: 86609655

GI number: 86609655

Start: 2317633

End: 2318424

Strand: Reverse

Name: potC [H]

Synonym: CYB_2209

Alternate gene names: 86609655

Gene position: 2318424-2317633 (Counterclockwise)

Preceding gene: 86609657

Following gene: 86609652

Centisome position: 76.1

GC content: 55.05

Gene sequence:

>792_bases
ATGTTGGCAAGGATACCCACCTGGCTGCGGGGAGTCAGCTATGCCATCTATGGCTTTCTCTACCTGCCAATTCTGCTGAT
CGCCGTCTACTCCTTTAACCGAGCCCGCTTTGGCCTGGCGTGGACAGGTTTTACCTTCGATTGGTACCTTTCCCTGTTTC
AGAATGCCCTGGTCTGGCAGGCCACGCAAAATACCCTCGTCCTGGCGTTGGTCAGCACGCTGGTCAGCACGCTGCTGGGA
TCCCTGCTGGGCTATGGGCTGTATCGCTATCGCTTCCCCGGTAAAAAGATCCTGCAGGGGCTGATGCTGTTGCCGGTGAT
CGTCCCCGATATTGTGATGGCCATCGCGCTGCTGCTATTCTACCAGTTTGTGCGCTTTTACACGGGCCTCTTTGAGCTGG
GCTTGGGGACGATGATCTTGGCCCACATTACGTTTCAGATTGCTTTTGTGGCTATTGTGGTGCGCAGCCGTCTCCAACTT
TTGGATCCCGCCCTGGAAGAAGCAGCCTATGACCTCTATGCAAACACCTGGCAAAAGCTACGCTATGTCACCTTGCCCTT
GGCCATGCCAGGGATCCAAGCTGCCGCTTTGCTGGCTTTTACCCTTTCGATAGATGATTTTGTCATCTCCTTTTTTACCA
GTGGGCCGGAGAGCCTGACCTTGCCAATTTTGATCTACAGCACGGCGCGACGAGGAGTTACCCCGGAAATCAATGCCCTC
TCCACCTTGATCATTCTGGTTACCTTGATCTTGGTCGTGGGCTTCCCCCTGCGGAGTGCTCCGCACCGCTGA

Upstream 100 bases:

>100_bases
TAGACAGGGTTGCAGGCTGATGTATAAAGCCTAGGGAGTTGCTGCAATTTTGGCAGCCTGCTCTACAGTGGGATAGACGC
AACTGAGATAGCACACGCGA

Downstream 100 bases:

>100_bases
CGCGAACAGCCGCTCCCGCCTGGGATCCCGCTAGCCGTTCTCGACAGTTCCCCCTCTCCCCCTGAGAGAGGTTGGAGATG
AGGGCGTGACATACTCCCAT

Product: spermidine/putrescine ABC transporter, permease protein PotC

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MLARIPTWLRGVSYAIYGFLYLPILLIAVYSFNRARFGLAWTGFTFDWYLSLFQNALVWQATQNTLVLALVSTLVSTLLG
SLLGYGLYRYRFPGKKILQGLMLLPVIVPDIVMAIALLLFYQFVRFYTGLFELGLGTMILAHITFQIAFVAIVVRSRLQL
LDPALEEAAYDLYANTWQKLRYVTLPLAMPGIQAAALLAFTLSIDDFVISFFTSGPESLTLPILIYSTARRGVTPEINAL
STLIILVTLILVVGFPLRSAPHR

Sequences:

>Translated_263_residues
MLARIPTWLRGVSYAIYGFLYLPILLIAVYSFNRARFGLAWTGFTFDWYLSLFQNALVWQATQNTLVLALVSTLVSTLLG
SLLGYGLYRYRFPGKKILQGLMLLPVIVPDIVMAIALLLFYQFVRFYTGLFELGLGTMILAHITFQIAFVAIVVRSRLQL
LDPALEEAAYDLYANTWQKLRYVTLPLAMPGIQAAALLAFTLSIDDFVISFFTSGPESLTLPILIYSTARRGVTPEINAL
STLIILVTLILVVGFPLRSAPHR
>Mature_263_residues
MLARIPTWLRGVSYAIYGFLYLPILLIAVYSFNRARFGLAWTGFTFDWYLSLFQNALVWQATQNTLVLALVSTLVSTLLG
SLLGYGLYRYRFPGKKILQGLMLLPVIVPDIVMAIALLLFYQFVRFYTGLFELGLGTMILAHITFQIAFVAIVVRSRLQL
LDPALEEAAYDLYANTWQKLRYVTLPLAMPGIQAAALLAFTLSIDDFVISFFTSGPESLTLPILIYSTARRGVTPEINAL
STLIILVTLILVVGFPLRSAPHR

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=247, Percent_Identity=43.7246963562753, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1787081, Length=241, Percent_Identity=39.4190871369295, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787714, Length=254, Percent_Identity=34.6456692913386, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1788764, Length=175, Percent_Identity=33.1428571428571, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29455; Mature: 29455

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLARIPTWLRGVSYAIYGFLYLPILLIAVYSFNRARFGLAWTGFTFDWYLSLFQNALVWQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCHHHHHHHHHHHHHHHH
ATQNTLVLALVSTLVSTLLGSLLGYGLYRYRFPGKKILQGLMLLPVIVPDIVMAIALLLF
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YQFVRFYTGLFELGLGTMILAHITFQIAFVAIVVRSRLQLLDPALEEAAYDLYANTWQKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYVTLPLAMPGIQAAALLAFTLSIDDFVISFFTSGPESLTLPILIYSTARRGVTPEINAL
HHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHEEEECCCCCCCCCHHHH
STLIILVTLILVVGFPLRSAPHR
HHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLARIPTWLRGVSYAIYGFLYLPILLIAVYSFNRARFGLAWTGFTFDWYLSLFQNALVWQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCHHHHHHHHHHHHHHHH
ATQNTLVLALVSTLVSTLLGSLLGYGLYRYRFPGKKILQGLMLLPVIVPDIVMAIALLLF
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
YQFVRFYTGLFELGLGTMILAHITFQIAFVAIVVRSRLQLLDPALEEAAYDLYANTWQKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYVTLPLAMPGIQAAALLAFTLSIDDFVISFFTSGPESLTLPILIYSTARRGVTPEINAL
HHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHEEEECCCCCCCCCHHHH
STLIILVTLILVVGFPLRSAPHR
HHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]