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The map label for this gene is yjcF [C]

Identifier: 86609581

GI number: 86609581

Start: 2227567

End: 2228805

Strand: Direct

Name: yjcF [C]

Synonym: CYB_2134

Alternate gene names: 86609581

Gene position: 2227567-2228805 (Clockwise)

Preceding gene: 86609580

Following gene: 86609582

Centisome position: 73.11

GC content: 58.43

Gene sequence:

>1239_bases
ATGCTCAGCCCCGTCCAGCAACTGCTGCACCAATACGCTCAGGGGGAACGGGATTTCAAGCAGCTGAATCTCAGCGCCCT
GGGGCTTTACCAAGCAGATCTGCAAGGGATCCTCCTCAGCGGGGCCGACCTCTCTGGCCTTTGTCTGGCTGAAGCAGTTC
TGTGCCGGGCCATTTTGGTGGGAACTGTCTTGGTGAATGCCAACCTGCGCCAAGCCTTCCTGGAACAAGCCAATCTGTGT
CGAGCAAACCTACGTCAGGCTAACCTATGGCGGGCCCAGCTAAAAGCTGCTGATTTGAACAATGCCCGCCTAACTGAAGC
CATTCTTTGTTACGCTGACCTCAGCCATAGCCGCCTTGAGGGAGCCCATCTGCAAGGGGCGGACTTGAGCCATGCCAACC
TCAGCCAGGCCAATCTCCGGCAAGCCAACTTGCGCCAAGCCAACCTGATGGGGGCTAACCTAAGCAGCGCCGTTTTGGCT
GACGCCGATTTGCATCAGGCCAATCTCGTGGGAGCGGACTTGCGGGGATCCCTGCTGCGGAGCGCCCACCTTACCCCTGA
GACCCAAATTGCAGAAAAGTGGCGCCAGGTGTGGCAAATCCTCAACTGGGAGCAGGAAGGACGAGATCTGGTGGGCAGGG
ATCTGTCGGAGGCAAATCTTTGCGGGGGCTATCTCCACTCGGCCCAATTGGATGAAGCCAACCTTGCCGATGCAGACCTC
AGCCAAGTCATCCTCTGCAGGGCTTCCTTGCAAAAGGCTAACCTGCGCCAAGCTCGCCTACTGCAAGCGGACTTGCAGGG
CTCCAATTTGCGAGAGGCTAACTTTGTCCATGCCGATCTGCGCGGCGCCAATCTCCGCGAAGCCCACCTCGGCGGGGCCG
ACTTAACCTCAGCCAACCTACAAGGGGCAGATCTCAGCCAGGCCGTCCTGCAGGGGACACGCCTAGACGCCCAGACCCAA
TTGGATCCCAAGTGGAAACAAGTTTGGCGGGTTCTCAACCAGCCGCGTTCCGGCTGGAGCTTGGCCCGAGCTAACCTTGC
AGATGCGTATTTGCGCCGAGCCTACCTGCAGCAAGCGGACTTGACCGGAGCGGATTTAAGAGGAGCTGATTTGCGAGAAG
CAGACTTGCAGGAAGCCAACTTGAGCCAAACCGACTTGCGGGGCACCAACCTGCGGGGAGCTAACCTGAACGGCGCTTTG
TTCAAGGGATCCCTTTACGACGAGTACACCTTTCTTTAG

Upstream 100 bases:

>100_bases
GCTACGAGTGGTTTGGCTGCCGTAACACCCTCTACCTATCGGCTTACCCTGTCTGTGTTCGCGGCCAGGATCTCCTGGTG
GATTTGGTAGATAAGGAATC

Downstream 100 bases:

>100_bases
ACTCACATTGTTGCTACAGCCTATTAAAAATAGGATACAAGTATTCAAGAGGAAGGAGAGAGGGATATGCCAACCCATTC
GCTAGAAGCTGGGAAGTGTA

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MLSPVQQLLHQYAQGERDFKQLNLSALGLYQADLQGILLSGADLSGLCLAEAVLCRAILVGTVLVNANLRQAFLEQANLC
RANLRQANLWRAQLKAADLNNARLTEAILCYADLSHSRLEGAHLQGADLSHANLSQANLRQANLRQANLMGANLSSAVLA
DADLHQANLVGADLRGSLLRSAHLTPETQIAEKWRQVWQILNWEQEGRDLVGRDLSEANLCGGYLHSAQLDEANLADADL
SQVILCRASLQKANLRQARLLQADLQGSNLREANFVHADLRGANLREAHLGGADLTSANLQGADLSQAVLQGTRLDAQTQ
LDPKWKQVWRVLNQPRSGWSLARANLADAYLRRAYLQQADLTGADLRGADLREADLQEANLSQTDLRGTNLRGANLNGAL
FKGSLYDEYTFL

Sequences:

>Translated_412_residues
MLSPVQQLLHQYAQGERDFKQLNLSALGLYQADLQGILLSGADLSGLCLAEAVLCRAILVGTVLVNANLRQAFLEQANLC
RANLRQANLWRAQLKAADLNNARLTEAILCYADLSHSRLEGAHLQGADLSHANLSQANLRQANLRQANLMGANLSSAVLA
DADLHQANLVGADLRGSLLRSAHLTPETQIAEKWRQVWQILNWEQEGRDLVGRDLSEANLCGGYLHSAQLDEANLADADL
SQVILCRASLQKANLRQARLLQADLQGSNLREANFVHADLRGANLREAHLGGADLTSANLQGADLSQAVLQGTRLDAQTQ
LDPKWKQVWRVLNQPRSGWSLARANLADAYLRRAYLQQADLTGADLRGADLREADLQEANLSQTDLRGTNLRGANLNGAL
FKGSLYDEYTFL
>Mature_412_residues
MLSPVQQLLHQYAQGERDFKQLNLSALGLYQADLQGILLSGADLSGLCLAEAVLCRAILVGTVLVNANLRQAFLEQANLC
RANLRQANLWRAQLKAADLNNARLTEAILCYADLSHSRLEGAHLQGADLSHANLSQANLRQANLRQANLMGANLSSAVLA
DADLHQANLVGADLRGSLLRSAHLTPETQIAEKWRQVWQILNWEQEGRDLVGRDLSEANLCGGYLHSAQLDEANLADADL
SQVILCRASLQKANLRQARLLQADLQGSNLREANFVHADLRGANLREAHLGGADLTSANLQGADLSQAVLQGTRLDAQTQ
LDPKWKQVWRVLNQPRSGWSLARANLADAYLRRAYLQQADLTGADLRGADLREADLQEANLSQTDLRGTNLRGANLNGAL
FKGSLYDEYTFL

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=169, Percent_Identity=33.7278106508876, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221377802, Length=219, Percent_Identity=30.1369863013699, Blast_Score=79, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 45067; Mature: 45067

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSPVQQLLHQYAQGERDFKQLNLSALGLYQADLQGILLSGADLSGLCLAEAVLCRAILV
CCCHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHH
GTVLVNANLRQAFLEQANLCRANLRQANLWRAQLKAADLNNARLTEAILCYADLSHSRLE
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHCC
GAHLQGADLSHANLSQANLRQANLRQANLMGANLSSAVLADADLHQANLVGADLRGSLLR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHCCCCHHHHHHHH
SAHLTPETQIAEKWRQVWQILNWEQEGRDLVGRDLSEANLCGGYLHSAQLDEANLADADL
HHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
SQVILCRASLQKANLRQARLLQADLQGSNLREANFVHADLRGANLREAHLGGADLTSANL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCC
QGADLSQAVLQGTRLDAQTQLDPKWKQVWRVLNQPRSGWSLARANLADAYLRRAYLQQAD
CCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
LTGADLRGADLREADLQEANLSQTDLRGTNLRGANLNGALFKGSLYDEYTFL
CCCCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCEEEECCCCCCCCCC
>Mature Secondary Structure
MLSPVQQLLHQYAQGERDFKQLNLSALGLYQADLQGILLSGADLSGLCLAEAVLCRAILV
CCCHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHH
GTVLVNANLRQAFLEQANLCRANLRQANLWRAQLKAADLNNARLTEAILCYADLSHSRLE
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHCC
GAHLQGADLSHANLSQANLRQANLRQANLMGANLSSAVLADADLHQANLVGADLRGSLLR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHCCCCHHHHHHHH
SAHLTPETQIAEKWRQVWQILNWEQEGRDLVGRDLSEANLCGGYLHSAQLDEANLADADL
HHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
SQVILCRASLQKANLRQARLLQADLQGSNLREANFVHADLRGANLREAHLGGADLTSANL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCC
QGADLSQAVLQGTRLDAQTQLDPKWKQVWRVLNQPRSGWSLARANLADAYLRRAYLQQAD
CCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
LTGADLRGADLREADLQEANLSQTDLRGTNLRGANLNGALFKGSLYDEYTFL
CCCCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]