Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is cbiQ

Identifier: 86609484

GI number: 86609484

Start: 2137433

End: 2138263

Strand: Direct

Name: cbiQ

Synonym: CYB_2036

Alternate gene names: NA

Gene position: 2137433-2138263 (Clockwise)

Preceding gene: 86609483

Following gene: 86609485

Centisome position: 70.16

GC content: 65.46

Gene sequence:

>831_bases
ATGGCAAGAGATGAAGCCGGCTCAGGGATCCCTTGCTGCTGGCGCGGTCAACAATCCCATCCTCACCCCTCCAAACCCCT
TTCCTGGCTGCACCGGTGGCAACCTCTGCCCAAGGTGCTGGGCCTGATGGCGCTGATGGCGGCTTTCGCCTCGGTGAGGT
GCCTGGCCCTCTTGCCGCTCATCTGGGCGCTGGTGGCTGGACTGTGGAGCCTGTCGGGATTGCCTTGGAGCCTCGGGCTG
AGGCGGCTGGCAGCCCCAGGGCTGTTGGTGGCAGGGTTGATGGGGATCCTACCCTTCTGGGCGGGGGAAACCATCCTGTG
GCGCTGGGGATCCCTGGCTCTGCGTTGGGAGGGGCTGCAGATGGCGCTTCGCATTGGGGGGAGAGGGCTGGCCCTATTTG
CCCTCACGATGCTGCTGCTGGAGACCACTCCCACATCGGAACTGTTGGCAGCTTTGCGGGCCCTGGGGATCCCAGACCTC
CTGCTGGAACTGGCCTGGCTCACCCAGCGCTATTTGCAGGAGGTGGCCGCTCAGTGGCAGCAGATGCAACGGGCAGCCCG
GCTGAGGGGTTGGCGACCGCGGGGATCCCTGTGGCGTCCTGGGCCGTCTCTAAGACAAGATCTGCCCTTTCTGGCCGCTT
CGGTGGGCACCCTGTTGGTTCGCAGCTACGAGCGCTCGCAGAGGGTTTATCAGGCTTTGCGCCTGCGGGGCTATGGACGG
GCACCTCTGTTTTCGACGGCGGCTGGCGGGGATCCCTACAGTTGGGCGGCCACCGCGTTGGCCGTGGCTACGGCTCTATT
GCTCCGCAACGCTGATGCGGCCCTCAACTAG

Upstream 100 bases:

>100_bases
TTGGTGGTGGCCCACATCCCCCTGATGGTGGTGGAGGGGTTGTTCGCCAGTTGGGTGGTGCTGTTTTTGCAGCGGGTACA
ACCGGCGCTGCTGGGAGACT

Downstream 100 bases:

>100_bases
AATAGATAAGCCTCTGGCAAGCTGCCCCCTTTTTGATGCTCAGTCCATGAATGGGTTAGAAGCGACCGTCTCCAGTTTCC
CATCCGTTAAGGACTCCGTC

Product: cobalt ABC transporter, permease protein CbiQ

Products: NA

Alternate protein names: Cobalt ABC Transporter Inner Membrane Subunit CbiQ

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MARDEAGSGIPCCWRGQQSHPHPSKPLSWLHRWQPLPKVLGLMALMAAFASVRCLALLPLIWALVAGLWSLSGLPWSLGL
RRLAAPGLLVAGLMGILPFWAGETILWRWGSLALRWEGLQMALRIGGRGLALFALTMLLLETTPTSELLAALRALGIPDL
LLELAWLTQRYLQEVAAQWQQMQRAARLRGWRPRGSLWRPGPSLRQDLPFLAASVGTLLVRSYERSQRVYQALRLRGYGR
APLFSTAAGGDPYSWAATALAVATALLLRNADAALN

Sequences:

>Translated_276_residues
MARDEAGSGIPCCWRGQQSHPHPSKPLSWLHRWQPLPKVLGLMALMAAFASVRCLALLPLIWALVAGLWSLSGLPWSLGL
RRLAAPGLLVAGLMGILPFWAGETILWRWGSLALRWEGLQMALRIGGRGLALFALTMLLLETTPTSELLAALRALGIPDL
LLELAWLTQRYLQEVAAQWQQMQRAARLRGWRPRGSLWRPGPSLRQDLPFLAASVGTLLVRSYERSQRVYQALRLRGYGR
APLFSTAAGGDPYSWAATALAVATALLLRNADAALN
>Mature_275_residues
ARDEAGSGIPCCWRGQQSHPHPSKPLSWLHRWQPLPKVLGLMALMAAFASVRCLALLPLIWALVAGLWSLSGLPWSLGLR
RLAAPGLLVAGLMGILPFWAGETILWRWGSLALRWEGLQMALRIGGRGLALFALTMLLLETTPTSELLAALRALGIPDLL
LELAWLTQRYLQEVAAQWQQMQRAARLRGWRPRGSLWRPGPSLRQDLPFLAASVGTLLVRSYERSQRVYQALRLRGYGRA
PLFSTAAGGDPYSWAATALAVATALLLRNADAALN

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30352; Mature: 30221

Theoretical pI: Translated: 11.79; Mature: 11.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARDEAGSGIPCCWRGQQSHPHPSKPLSWLHRWQPLPKVLGLMALMAAFASVRCLALLPL
CCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IWALVAGLWSLSGLPWSLGLRRLAAPGLLVAGLMGILPFWAGETILWRWGSLALRWEGLQ
HHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHEEECCCHHEEHHHHH
MALRIGGRGLALFALTMLLLETTPTSELLAALRALGIPDLLLELAWLTQRYLQEVAAQWQ
HHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
QMQRAARLRGWRPRGSLWRPGPSLRQDLPFLAASVGTLLVRSYERSQRVYQALRLRGYGR
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
APLFSTAAGGDPYSWAATALAVATALLLRNADAALN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure 
ARDEAGSGIPCCWRGQQSHPHPSKPLSWLHRWQPLPKVLGLMALMAAFASVRCLALLPL
CCCCCCCCCCCEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IWALVAGLWSLSGLPWSLGLRRLAAPGLLVAGLMGILPFWAGETILWRWGSLALRWEGLQ
HHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHEEECCCHHEEHHHHH
MALRIGGRGLALFALTMLLLETTPTSELLAALRALGIPDLLLELAWLTQRYLQEVAAQWQ
HHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
QMQRAARLRGWRPRGSLWRPGPSLRQDLPFLAASVGTLLVRSYERSQRVYQALRLRGYGR
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
APLFSTAAGGDPYSWAATALAVATALLLRNADAALN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA