| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609483
Identifier: 86609483
GI number: 86609483
Start: 2136745
End: 2137446
Strand: Direct
Name: 86609483
Synonym: CYB_2035
Alternate gene names: NA
Gene position: 2136745-2137446 (Clockwise)
Preceding gene: 86609482
Following gene: 86609484
Centisome position: 70.13
GC content: 61.25
Gene sequence:
>702_bases ATGCACATCAGCGATGGCATTTTGCCGGCACCGCTTTGGCTAGGGGGTTATGGCATCACCGCCCTGATCACCAGCTACAG CTTGCGGCTTCTCCGTCGCGCCAGCGTTGCGGAGCAATGTCCTTGGTGGGAACGGGATCCCCGCCATATTGCTACGCAAC GCTGTCGCGACCAGTTGCCCAAAGCGGCTTTGCTCACGGCTGTCTTTTTTGTGGCCTCTTCGATTCACCTGCCCTTTCCC CCGGCCAGCCTGCATCTGGTGCTGAACGGGTTGATGGGTCTGATGTTGGGGGCTTTGGCCTATCCGGCGATTGTAGTGGG CTTGTTTTTTCAGGCGGTGGCCTTTGGCCATGGGGGCCTGACCACATTGGGCATCAACGCCGCCATTATGGGGATCCCGG CGCTCCTGGCCGGTGGGATTTTTCGGGCAGGCCGTCGGGTGATGGGGGCCGGAGTGTCTGCCTTCTTGGCGGGAGCGGTT GGGGTGGGTCTAGCAGTGCTGTTGTTTTACGGGGTGGTCATGGCTGCTGTGGTTGACGCTGGCAGCGGGATCCTCTCCAC AGAAGCCGGTCGCCTGGCTCTTGGGAGCTTGGTGGTGGCCCACATCCCCCTGATGGTGGTGGAGGGGTTGTTCGCCAGTT GGGTGGTGCTGTTTTTGCAGCGGGTACAACCGGCGCTGCTGGGAGACTATGGCAAGAGATGA
Upstream 100 bases:
>100_bases CTGGTTACGCAGCGGTGGAGAGCCCACCGGTTTCGGGATCTCCAGGGTCAGGAATCTCAGGCTCCCAGGCTGGCTCCTCT GCTCTGGAGTAGGACTGACC
Downstream 100 bases:
>100_bases AGCCGGCTCAGGGATCCCTTGCTGCTGGCGCGGTCAACAATCCCATCCTCACCCCTCCAAACCCCTTTCCTGGCTGCACC GGTGGCAACCTCTGCCCAAG
Product: cobalt transport protein CbiM
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 233; Mature: 233
Protein sequence:
>233_residues MHISDGILPAPLWLGGYGITALITSYSLRLLRRASVAEQCPWWERDPRHIATQRCRDQLPKAALLTAVFFVASSIHLPFP PASLHLVLNGLMGLMLGALAYPAIVVGLFFQAVAFGHGGLTTLGINAAIMGIPALLAGGIFRAGRRVMGAGVSAFLAGAV GVGLAVLLFYGVVMAAVVDAGSGILSTEAGRLALGSLVVAHIPLMVVEGLFASWVVLFLQRVQPALLGDYGKR
Sequences:
>Translated_233_residues MHISDGILPAPLWLGGYGITALITSYSLRLLRRASVAEQCPWWERDPRHIATQRCRDQLPKAALLTAVFFVASSIHLPFP PASLHLVLNGLMGLMLGALAYPAIVVGLFFQAVAFGHGGLTTLGINAAIMGIPALLAGGIFRAGRRVMGAGVSAFLAGAV GVGLAVLLFYGVVMAAVVDAGSGILSTEAGRLALGSLVVAHIPLMVVEGLFASWVVLFLQRVQPALLGDYGKR >Mature_233_residues MHISDGILPAPLWLGGYGITALITSYSLRLLRRASVAEQCPWWERDPRHIATQRCRDQLPKAALLTAVFFVASSIHLPFP PASLHLVLNGLMGLMLGALAYPAIVVGLFFQAVAFGHGGLTTLGINAAIMGIPALLAGGIFRAGRRVMGAGVSAFLAGAV GVGLAVLLFYGVVMAAVVDAGSGILSTEAGRLALGSLVVAHIPLMVVEGLFASWVVLFLQRVQPALLGDYGKR
Specific function: Unknown
COG id: COG0310
COG function: function code P; ABC-type Co2+ transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002751 [H]
Pfam domain/function: PF01891 CbiM [H]
EC number: NA
Molecular weight: Translated: 24377; Mature: 24377
Theoretical pI: Translated: 10.15; Mature: 10.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHISDGILPAPLWLGGYGITALITSYSLRLLRRASVAEQCPWWERDPRHIATQRCRDQLP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC KAALLTAVFFVASSIHLPFPPASLHLVLNGLMGLMLGALAYPAIVVGLFFQAVAFGHGGL HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TTLGINAAIMGIPALLAGGIFRAGRRVMGAGVSAFLAGAVGVGLAVLLFYGVVMAAVVDA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GSGILSTEAGRLALGSLVVAHIPLMVVEGLFASWVVLFLQRVQPALLGDYGKR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MHISDGILPAPLWLGGYGITALITSYSLRLLRRASVAEQCPWWERDPRHIATQRCRDQLP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC KAALLTAVFFVASSIHLPFPPASLHLVLNGLMGLMLGALAYPAIVVGLFFQAVAFGHGGL HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TTLGINAAIMGIPALLAGGIFRAGRRVMGAGVSAFLAGAVGVGLAVLLFYGVVMAAVVDA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GSGILSTEAGRLALGSLVVAHIPLMVVEGLFASWVVLFLQRVQPALLGDYGKR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]