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The map label for this gene is rfaQ [H]

Identifier: 86609430

GI number: 86609430

Start: 2080408

End: 2081415

Strand: Direct

Name: rfaQ [H]

Synonym: CYB_1980

Alternate gene names: 86609430

Gene position: 2080408-2081415 (Clockwise)

Preceding gene: 86609428

Following gene: 86609432

Centisome position: 68.28

GC content: 64.09

Gene sequence:

>1008_bases
ATGCAGGCGGTTTCTCCAGCAGCTAAAGCCCCTTTGGCACCTCGGATTCTGGCTTTGGTGCCGGGCGGGATTGGTGACCA
GATTTTGTTTTTCCCCGCCCTGGCCAGTTTGCGGCAGCGCTTCCCGGAGGCGGAGCTGGAGGTGGTTGTGGAGCCGCGGG
CAGCAGGGGCTTATGAGGTTTGCCCTTCGGTGAGTCGGGTGCTGACTTTTCCGTTCAAAGAACAGCTGTCGTTGGGGGAT
CTCAGCGACCTGCTGGGGCGGATTCGCGAGCGGCAGTATGACGGGGTGCTGAGCCTGGGCCGAAGCTTGGGGGTGAAGCT
GTTGTTGTGGCTGACCGGCATTCCCAAGCGAGTGGGCTATGCGCCGCCGGGGCCGGGGCGACCTTGGCTGACCGACCCGG
TGCCCCTGAAGCCGGCCCAGTATGCGGCCCAGATGTACCACGACCTGGTGCAGGGGTTTGGCATTGCTGCGCCGGCGGGG
TTGCCCCAGATTCGTCTGAAAAAAGCAGACCTGGAGTGGGCAGAGCAGGAACGCAAGCGCCTTTTGGGGGATGCCGCCCA
AGATTATGTGCTGTTGCATCCGGGGGCCAGCCAGCTGTCGCAGGAGAAGGGAATTCAGAAGATCTATCCCTCTGCCAACT
GGGTCAAGGTCATCAAGGGTTTTCGGGAGCAGCGGCCGGAGCTGCCGTTGGTGCTGGTGGTGGGGCCAGAGGATGAGCAG
CTGGCGGAGGGCTTTCTGGCGCAACTGCCGGAGCTGCCGGTGAGCCGTCCTGTCCGGCTGGGGCAGCTGGCGGCCTTGAT
TGGTGGGGCAACGCTGCTGTTGTGCGCCGATAGCGCTCCCATGCATTTGGCGGTGGCGGTGCAGACGCCGCTGGTGGCGT
TGTTTGGGCCCACCGACCCGCTGCGGTTGCTGCCTTCAGAGGGGCCGTTTCGGGCGGTCAAGGGGGCCGATGGGAAGGTG
GAGTCGATTGCCCCCGAGCAAATTCTGCAGGTGATCTTTCCGGCCTAG

Upstream 100 bases:

>100_bases
GTCTTCCGCGGGTCGAGCTGGCCCTGAATCTATCCACCCAATCTGAGATAGAGTAAGCGGGGATCCCCTAGGCTGGATAC
AGCTTTCTACAGGATGCTTT

Downstream 100 bases:

>100_bases
AGCCAAGGTTTTCGTGGCAGCAACCCAGTCCAGTTTCTCTGCAGGCGGACCGAGAAGCCTTCTAGCCTGGGAGATGTGTC
CCTGTCTGCTTTTAGCCGGC

Product: heptosyltransferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MQAVSPAAKAPLAPRILALVPGGIGDQILFFPALASLRQRFPEAELEVVVEPRAAGAYEVCPSVSRVLTFPFKEQLSLGD
LSDLLGRIRERQYDGVLSLGRSLGVKLLLWLTGIPKRVGYAPPGPGRPWLTDPVPLKPAQYAAQMYHDLVQGFGIAAPAG
LPQIRLKKADLEWAEQERKRLLGDAAQDYVLLHPGASQLSQEKGIQKIYPSANWVKVIKGFREQRPELPLVLVVGPEDEQ
LAEGFLAQLPELPVSRPVRLGQLAALIGGATLLLCADSAPMHLAVAVQTPLVALFGPTDPLRLLPSEGPFRAVKGADGKV
ESIAPEQILQVIFPA

Sequences:

>Translated_335_residues
MQAVSPAAKAPLAPRILALVPGGIGDQILFFPALASLRQRFPEAELEVVVEPRAAGAYEVCPSVSRVLTFPFKEQLSLGD
LSDLLGRIRERQYDGVLSLGRSLGVKLLLWLTGIPKRVGYAPPGPGRPWLTDPVPLKPAQYAAQMYHDLVQGFGIAAPAG
LPQIRLKKADLEWAEQERKRLLGDAAQDYVLLHPGASQLSQEKGIQKIYPSANWVKVIKGFREQRPELPLVLVVGPEDEQ
LAEGFLAQLPELPVSRPVRLGQLAALIGGATLLLCADSAPMHLAVAVQTPLVALFGPTDPLRLLPSEGPFRAVKGADGKV
ESIAPEQILQVIFPA
>Mature_335_residues
MQAVSPAAKAPLAPRILALVPGGIGDQILFFPALASLRQRFPEAELEVVVEPRAAGAYEVCPSVSRVLTFPFKEQLSLGD
LSDLLGRIRERQYDGVLSLGRSLGVKLLLWLTGIPKRVGYAPPGPGRPWLTDPVPLKPAQYAAQMYHDLVQGFGIAAPAG
LPQIRLKKADLEWAEQERKRLLGDAAQDYVLLHPGASQLSQEKGIQKIYPSANWVKVIKGFREQRPELPLVLVVGPEDEQ
LAEGFLAQLPELPVSRPVRLGQLAALIGGATLLLCADSAPMHLAVAVQTPLVALFGPTDPLRLLPSEGPFRAVKGADGKV
ESIAPEQILQVIFPA

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=299, Percent_Identity=23.7458193979933, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790050, Length=348, Percent_Identity=23.5632183908046, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 36108; Mature: 36108

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAVSPAAKAPLAPRILALVPGGIGDQILFFPALASLRQRFPEAELEVVVEPRAAGAYEV
CCCCCCHHCCCCCCEEHEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
CPSVSRVLTFPFKEQLSLGDLSDLLGRIRERQYDGVLSLGRSLGVKLLLWLTGIPKRVGY
CCHHHHHEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
APPGPGRPWLTDPVPLKPAQYAAQMYHDLVQGFGIAAPAGLPQIRLKKADLEWAEQERKR
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHH
LLGDAAQDYVLLHPGASQLSQEKGIQKIYPSANWVKVIKGFREQRPELPLVLVVGPEDEQ
HHHHCCCCEEEECCCHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHH
LAEGFLAQLPELPVSRPVRLGQLAALIGGATLLLCADSAPMHLAVAVQTPLVALFGPTDP
HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCEEEEECCCCC
LRLLPSEGPFRAVKGADGKVESIAPEQILQVIFPA
CEECCCCCCCCEECCCCCCCHHCCHHHHHHHHCCC
>Mature Secondary Structure
MQAVSPAAKAPLAPRILALVPGGIGDQILFFPALASLRQRFPEAELEVVVEPRAAGAYEV
CCCCCCHHCCCCCCEEHEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
CPSVSRVLTFPFKEQLSLGDLSDLLGRIRERQYDGVLSLGRSLGVKLLLWLTGIPKRVGY
CCHHHHHEECCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
APPGPGRPWLTDPVPLKPAQYAAQMYHDLVQGFGIAAPAGLPQIRLKKADLEWAEQERKR
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHH
LLGDAAQDYVLLHPGASQLSQEKGIQKIYPSANWVKVIKGFREQRPELPLVLVVGPEDEQ
HHHHCCCCEEEECCCHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHH
LAEGFLAQLPELPVSRPVRLGQLAALIGGATLLLCADSAPMHLAVAVQTPLVALFGPTDP
HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCEEEEECCCCC
LRLLPSEGPFRAVKGADGKVESIAPEQILQVIFPA
CEECCCCCCCCEECCCCCCCHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA