Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609392

Identifier: 86609392

GI number: 86609392

Start: 2028967

End: 2029485

Strand: Reverse

Name: 86609392

Synonym: CYB_1936

Alternate gene names: NA

Gene position: 2029485-2028967 (Counterclockwise)

Preceding gene: 86609393

Following gene: 86609391

Centisome position: 66.61

GC content: 56.65

Gene sequence:

>519_bases
ATGCTGGGGGATCTGGATTTATTGATGGGGGATGAGACCCAAGAGTTGCGGGAGATGGAGGCTCCCGAAGGTGAGCTATT
CCTAAAGTTCAAGATTGCCACCGGGGAGGAATTTGCGCTGCCAGCGGTATCGGTTGTGGAGGTGATGAGCATTGGCCCAG
AGAAAATCACCCCCATGCCCAATGTGGCCCCAGTTTTGCTGGGCACGCTGAATTTGCGGGGCGAGATCATCTGGGTTGCA
GACCTGGGGCAATTTTTGGGGATCAGCCCGCCCCTGAACATCGACCGAGCCGAGATTCCTGTGGTGGCCGTGATGGATCA
ACAGGATTTGCTCATGGGCTTGGCTGTGGATTTAATTGTAGGCATGGAGTGGCTGAAGACTGAATTGGTGCGGCCTGCCC
TCACGGCTCCTGAGTCCATGGCTCCTTTTTTGCGAGGGGAATGGGTGGTGCCCGGAACGGGATCGCGCTTGCCATTGCTG
GATCAGTCGGCCATCCTGCGATCCAATCGTTGGGGTTGA

Upstream 100 bases:

>100_bases
CTTCCACGCCTTTCGGTAGGTCCTGAGAACGACTCTGCGTTTTAAGCAGGGAGGGGGGCGGGATCAACAGTCCACAAGAC
TATCCATGCGGGGGAGCATC

Downstream 100 bases:

>100_bases
CAAGCGGCCCCCTGTGAGTTCGGCGAGAGGAAAGTGTATAGTTCCTATCAAAGATCCAAGCTAACTCCAGCCACAATGGG
GAAAGTTGGACCAAATCTAT

Product: CheW domain-containing protein

Products: NA

Alternate protein names: Chemotaxis Protein; CheW Domain-Containing Protein; CheW-Like Protein; Chemotaxis Protein CheW

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MLGDLDLLMGDETQELREMEAPEGELFLKFKIATGEEFALPAVSVVEVMSIGPEKITPMPNVAPVLLGTLNLRGEIIWVA
DLGQFLGISPPLNIDRAEIPVVAVMDQQDLLMGLAVDLIVGMEWLKTELVRPALTAPESMAPFLRGEWVVPGTGSRLPLL
DQSAILRSNRWG

Sequences:

>Translated_172_residues
MLGDLDLLMGDETQELREMEAPEGELFLKFKIATGEEFALPAVSVVEVMSIGPEKITPMPNVAPVLLGTLNLRGEIIWVA
DLGQFLGISPPLNIDRAEIPVVAVMDQQDLLMGLAVDLIVGMEWLKTELVRPALTAPESMAPFLRGEWVVPGTGSRLPLL
DQSAILRSNRWG
>Mature_172_residues
MLGDLDLLMGDETQELREMEAPEGELFLKFKIATGEEFALPAVSVVEVMSIGPEKITPMPNVAPVLLGTLNLRGEIIWVA
DLGQFLGISPPLNIDRAEIPVVAVMDQQDLLMGLAVDLIVGMEWLKTELVRPALTAPESMAPFLRGEWVVPGTGSRLPLL
DQSAILRSNRWG

Specific function: Unknown

COG id: COG0835

COG function: function code NT; Chemotaxis signal transduction protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18771; Mature: 18771

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: PS50851 CHEW

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGDLDLLMGDETQELREMEAPEGELFLKFKIATGEEFALPAVSVVEVMSIGPEKITPMP
CCCCCCEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCHHCCCCC
NVAPVLLGTLNLRGEIIWVADLGQFLGISPPLNIDRAEIPVVAVMDQQDLLMGLAVDLIV
CHHHHHHEEECCCCCEEEEEECHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
GMEWLKTELVRPALTAPESMAPFLRGEWVVPGTGSRLPLLDQSAILRSNRWG
HHHHHHHHHHCCCCCCCHHHHHHHCCCEECCCCCCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MLGDLDLLMGDETQELREMEAPEGELFLKFKIATGEEFALPAVSVVEVMSIGPEKITPMP
CCCCCCEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCHHCCCCC
NVAPVLLGTLNLRGEIIWVADLGQFLGISPPLNIDRAEIPVVAVMDQQDLLMGLAVDLIV
CHHHHHHEEECCCCCEEEEEECHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
GMEWLKTELVRPALTAPESMAPFLRGEWVVPGTGSRLPLLDQSAILRSNRWG
HHHHHHHHHHCCCCCCCHHHHHHHCCCEECCCCCCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA