| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609392
Identifier: 86609392
GI number: 86609392
Start: 2028967
End: 2029485
Strand: Reverse
Name: 86609392
Synonym: CYB_1936
Alternate gene names: NA
Gene position: 2029485-2028967 (Counterclockwise)
Preceding gene: 86609393
Following gene: 86609391
Centisome position: 66.61
GC content: 56.65
Gene sequence:
>519_bases ATGCTGGGGGATCTGGATTTATTGATGGGGGATGAGACCCAAGAGTTGCGGGAGATGGAGGCTCCCGAAGGTGAGCTATT CCTAAAGTTCAAGATTGCCACCGGGGAGGAATTTGCGCTGCCAGCGGTATCGGTTGTGGAGGTGATGAGCATTGGCCCAG AGAAAATCACCCCCATGCCCAATGTGGCCCCAGTTTTGCTGGGCACGCTGAATTTGCGGGGCGAGATCATCTGGGTTGCA GACCTGGGGCAATTTTTGGGGATCAGCCCGCCCCTGAACATCGACCGAGCCGAGATTCCTGTGGTGGCCGTGATGGATCA ACAGGATTTGCTCATGGGCTTGGCTGTGGATTTAATTGTAGGCATGGAGTGGCTGAAGACTGAATTGGTGCGGCCTGCCC TCACGGCTCCTGAGTCCATGGCTCCTTTTTTGCGAGGGGAATGGGTGGTGCCCGGAACGGGATCGCGCTTGCCATTGCTG GATCAGTCGGCCATCCTGCGATCCAATCGTTGGGGTTGA
Upstream 100 bases:
>100_bases CTTCCACGCCTTTCGGTAGGTCCTGAGAACGACTCTGCGTTTTAAGCAGGGAGGGGGGCGGGATCAACAGTCCACAAGAC TATCCATGCGGGGGAGCATC
Downstream 100 bases:
>100_bases CAAGCGGCCCCCTGTGAGTTCGGCGAGAGGAAAGTGTATAGTTCCTATCAAAGATCCAAGCTAACTCCAGCCACAATGGG GAAAGTTGGACCAAATCTAT
Product: CheW domain-containing protein
Products: NA
Alternate protein names: Chemotaxis Protein; CheW Domain-Containing Protein; CheW-Like Protein; Chemotaxis Protein CheW
Number of amino acids: Translated: 172; Mature: 172
Protein sequence:
>172_residues MLGDLDLLMGDETQELREMEAPEGELFLKFKIATGEEFALPAVSVVEVMSIGPEKITPMPNVAPVLLGTLNLRGEIIWVA DLGQFLGISPPLNIDRAEIPVVAVMDQQDLLMGLAVDLIVGMEWLKTELVRPALTAPESMAPFLRGEWVVPGTGSRLPLL DQSAILRSNRWG
Sequences:
>Translated_172_residues MLGDLDLLMGDETQELREMEAPEGELFLKFKIATGEEFALPAVSVVEVMSIGPEKITPMPNVAPVLLGTLNLRGEIIWVA DLGQFLGISPPLNIDRAEIPVVAVMDQQDLLMGLAVDLIVGMEWLKTELVRPALTAPESMAPFLRGEWVVPGTGSRLPLL DQSAILRSNRWG >Mature_172_residues MLGDLDLLMGDETQELREMEAPEGELFLKFKIATGEEFALPAVSVVEVMSIGPEKITPMPNVAPVLLGTLNLRGEIIWVA DLGQFLGISPPLNIDRAEIPVVAVMDQQDLLMGLAVDLIVGMEWLKTELVRPALTAPESMAPFLRGEWVVPGTGSRLPLL DQSAILRSNRWG
Specific function: Unknown
COG id: COG0835
COG function: function code NT; Chemotaxis signal transduction protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18771; Mature: 18771
Theoretical pI: Translated: 4.01; Mature: 4.01
Prosite motif: PS50851 CHEW
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGDLDLLMGDETQELREMEAPEGELFLKFKIATGEEFALPAVSVVEVMSIGPEKITPMP CCCCCCEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCHHCCCCC NVAPVLLGTLNLRGEIIWVADLGQFLGISPPLNIDRAEIPVVAVMDQQDLLMGLAVDLIV CHHHHHHEEECCCCCEEEEEECHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH GMEWLKTELVRPALTAPESMAPFLRGEWVVPGTGSRLPLLDQSAILRSNRWG HHHHHHHHHHCCCCCCCHHHHHHHCCCEECCCCCCCCCCCCHHHHHHCCCCC >Mature Secondary Structure MLGDLDLLMGDETQELREMEAPEGELFLKFKIATGEEFALPAVSVVEVMSIGPEKITPMP CCCCCCEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCHHCCCCC NVAPVLLGTLNLRGEIIWVADLGQFLGISPPLNIDRAEIPVVAVMDQQDLLMGLAVDLIV CHHHHHHEEECCCCCEEEEEECHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH GMEWLKTELVRPALTAPESMAPFLRGEWVVPGTGSRLPLLDQSAILRSNRWG HHHHHHHHHHCCCCCCCHHHHHHHCCCEECCCCCCCCCCCCHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA