BacMap

Definition	Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession	NC_007776
Length	3,046,682

Click here to switch to the map view.

The map label for this gene is ydfG [C]

Identifier: 86609360

GI number: 86609360

Start: 1989976

End: 1990704

Strand: Direct

Name: ydfG [C]

Synonym: CYB_1904

Alternate gene names: 86609360

Gene position: 1989976-1990704 (Clockwise)

Preceding gene: 86609359

Following gene: 86609361

Centisome position: 65.32

GC content: 59.26

Gene sequence:

>729_bases
GTGTCTTCTCCGCTATCGCAGGCAGTTATTTTGATCACAGGGGCAACAGGGGGTATCGGCAGCGTCCTGGTGCCCATGCT
GGCTCAGGCCGGATCCCATCTGGTGTTGGCCGCTCGGCGAGAAGAGCCCCTGCGAGCTCTGGTGGAGAAATCAGCCTCTT
TGGGGGCTGCCTCTGGATTGGGGATCCCTACTGATGTGACGGACTATGCCCAGGTAGAGGCCCTGGTCAACCAAACGGTG
CAAAAGCATGGGCGCATTGACGTGCTGATTAACCTGGCCGGGGCCGGGATCCTGAAGCCTGCTCCCCAGCTAACCCCCGC
AGACCTGGAGCGAATGCTGGCGGTCAACCTGAAGGGCAGCTTCTACACCAGCCAACTGGCTGCCAACCCCATGCGGGAGC
AAAAATCCGGCCACATCCTCAATTTTCCCGGCGTCCTTGGACGTTATCCCATGGCGATGGCCTCTGCTTACTGTGCGGCC
AAGTTTGGGGTGGTCGGGTTTAGCAAGTGCATGGCCGATGAGCTGAAGCGCTTTGGGGTCAGATTTACGCTGTTTTACTT
CGGGGGCATCGACTCACCCTTCTGGGATCCCATCAGCCTGAAGGTGCAACGAGACAAGATGCTCAGCCCTGCCACGGCTG
CGGAAGCCATCTGCTTTGCCCTTACAGCGCCCGCTGGTGCTGTACCGAGCGAGATAGTGTTGCAGCCGGAAAGCCACCAA
TTCCTTTGA

Upstream 100 bases:

>100_bases
TCCACCGCTCAGATGACCTCTGTCGAGGGATCCAGTGGGGCTGTGACTGGCTTGTCGGGATCCCTGTGTATGATGGGAAA
AAGAGTTTAAGAAACGTAAC

Downstream 100 bases:

>100_bases
CCAAGTGTTTTGCCGTCCTTTTGCTGGGGTTGAGGCGGCAGCAGCTTGTCTTTTGGTGAAACAAGCGCTCGAGTTTCTCT
CTTGGGCTCCCCCCGTCTCA

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSSPLSQAVILITGATGGIGSVLVPMLAQAGSHLVLAARREEPLRALVEKSASLGAASGLGIPTDVTDYAQVEALVNQTV
QKHGRIDVLINLAGAGILKPAPQLTPADLERMLAVNLKGSFYTSQLAANPMREQKSGHILNFPGVLGRYPMAMASAYCAA
KFGVVGFSKCMADELKRFGVRFTLFYFGGIDSPFWDPISLKVQRDKMLSPATAAEAICFALTAPAGAVPSEIVLQPESHQ
FL

Sequences:

>Translated_242_residues
MSSPLSQAVILITGATGGIGSVLVPMLAQAGSHLVLAARREEPLRALVEKSASLGAASGLGIPTDVTDYAQVEALVNQTV
QKHGRIDVLINLAGAGILKPAPQLTPADLERMLAVNLKGSFYTSQLAANPMREQKSGHILNFPGVLGRYPMAMASAYCAA
KFGVVGFSKCMADELKRFGVRFTLFYFGGIDSPFWDPISLKVQRDKMLSPATAAEAICFALTAPAGAVPSEIVLQPESHQ
FL
>Mature_241_residues
SSPLSQAVILITGATGGIGSVLVPMLAQAGSHLVLAARREEPLRALVEKSASLGAASGLGIPTDVTDYAQVEALVNQTVQ
KHGRIDVLINLAGAGILKPAPQLTPADLERMLAVNLKGSFYTSQLAANPMREQKSGHILNFPGVLGRYPMAMASAYCAAK
FGVVGFSKCMADELKRFGVRFTLFYFGGIDSPFWDPISLKVQRDKMLSPATAAEAICFALTAPAGAVPSEIVLQPESHQF
L

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4503817, Length=211, Percent_Identity=28.436018957346, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI19923817, Length=247, Percent_Identity=26.3157894736842, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI7706318, Length=177, Percent_Identity=28.8135593220339, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI40254986, Length=180, Percent_Identity=30.5555555555556, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI32455239, Length=189, Percent_Identity=31.7460317460317, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI5031765, Length=189, Percent_Identity=31.7460317460317, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI50726952, Length=192, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI59889578, Length=177, Percent_Identity=27.683615819209, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI142976729, Length=170, Percent_Identity=30, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=26.9430051813472, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI210032110, Length=173, Percent_Identity=27.7456647398844, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI109715829, Length=244, Percent_Identity=26.2295081967213, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI31542939, Length=200, Percent_Identity=29, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI40254992, Length=176, Percent_Identity=28.9772727272727, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI223718074, Length=202, Percent_Identity=29.7029702970297, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI224922801, Length=171, Percent_Identity=30.4093567251462, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI38348362, Length=244, Percent_Identity=29.5081967213115, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI7657478, Length=192, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI157739938, Length=183, Percent_Identity=22.9508196721311, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI22507405, Length=183, Percent_Identity=30.0546448087432, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI15277342, Length=210, Percent_Identity=27.6190476190476, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI38424085, Length=175, Percent_Identity=32, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI10190704, Length=177, Percent_Identity=27.683615819209, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1787820, Length=244, Percent_Identity=27.4590163934426, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788459, Length=188, Percent_Identity=30.8510638297872, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787335, Length=191, Percent_Identity=28.2722513089005, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082160, Length=178, Percent_Identity=26.4044943820225, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082100, Length=199, Percent_Identity=28.643216080402, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789208, Length=178, Percent_Identity=29.2134831460674, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790717, Length=172, Percent_Identity=28.4883720930233, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI2367365, Length=185, Percent_Identity=27.5675675675676, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787905, Length=130, Percent_Identity=31.5384615384615, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=173, Percent_Identity=32.3699421965318, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71994600, Length=178, Percent_Identity=34.2696629213483, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=245, Percent_Identity=25.7142857142857, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=171, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=26.1538461538462, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=166, Percent_Identity=26.5060240963855, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=178, Percent_Identity=34.2696629213483, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=24.901185770751, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=178, Percent_Identity=30.3370786516854, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=242, Percent_Identity=28.099173553719, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=206, Percent_Identity=25.7281553398058, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=200, Percent_Identity=28.5, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=184, Percent_Identity=26.6304347826087, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=207, Percent_Identity=25.6038647342995, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=222, Percent_Identity=26.1261261261261, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=27.6923076923077, Blast_Score=72, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6320089, Length=170, Percent_Identity=27.6470588235294, Blast_Score=69, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=184, Percent_Identity=27.1739130434783, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=192, Percent_Identity=27.6041666666667, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI28571526, Length=183, Percent_Identity=34.4262295081967, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI21357041, Length=175, Percent_Identity=31.4285714285714, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24639444, Length=229, Percent_Identity=30.5676855895196, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24641232, Length=240, Percent_Identity=26.25, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24644339, Length=199, Percent_Identity=28.643216080402, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24665247, Length=212, Percent_Identity=28.3018867924528, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI221331216, Length=212, Percent_Identity=28.3018867924528, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI116007236, Length=242, Percent_Identity=26.8595041322314, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24665243, Length=212, Percent_Identity=27.8301886792453, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI221331218, Length=212, Percent_Identity=27.8301886792453, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI23397609, Length=182, Percent_Identity=35.1648351648352, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI281364494, Length=244, Percent_Identity=26.6393442622951, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281364892, Length=173, Percent_Identity=29.4797687861272, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21357673, Length=190, Percent_Identity=30, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24580925, Length=201, Percent_Identity=29.3532338308458, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571387, Length=249, Percent_Identity=28.1124497991968, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24581726, Length=175, Percent_Identity=26.8571428571429, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24648944, Length=236, Percent_Identity=27.9661016949153, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24649181, Length=176, Percent_Identity=26.1363636363636, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24643142, Length=181, Percent_Identity=31.4917127071823, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI21358495, Length=171, Percent_Identity=26.9005847953216, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=27.7173913043478, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17737361, Length=217, Percent_Identity=26.7281105990783, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25569; Mature: 25438

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPLSQAVILITGATGGIGSVLVPMLAQAGSHLVLAARREEPLRALVEKSASLGAASGL
CCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCCC
GIPTDVTDYAQVEALVNQTVQKHGRIDVLINLAGAGILKPAPQLTPADLERMLAVNLKGS
CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC
FYTSQLAANPMREQKSGHILNFPGVLGRYPMAMASAYCAAKFGVVGFSKCMADELKRFGV
HHHHHHHCCCHHHHCCCCEEECCHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCC
RFTLFYFGGIDSPFWDPISLKVQRDKMLSPATAAEAICFALTAPAGAVPSEIVLQPESHQ
EEEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCCCCCCHHEEECCCCCC
FL
CC
>Mature Secondary Structure 
SSPLSQAVILITGATGGIGSVLVPMLAQAGSHLVLAARREEPLRALVEKSASLGAASGL
CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCCC
GIPTDVTDYAQVEALVNQTVQKHGRIDVLINLAGAGILKPAPQLTPADLERMLAVNLKGS
CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC
FYTSQLAANPMREQKSGHILNFPGVLGRYPMAMASAYCAAKFGVVGFSKCMADELKRFGV
HHHHHHHCCCHHHHCCCCEEECCHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCC
RFTLFYFGGIDSPFWDPISLKVQRDKMLSPATAAEAICFALTAPAGAVPSEIVLQPESHQ
EEEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCCCCCCHHEEECCCCCC
FL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]