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The map label for this gene is ybeY [C]

Identifier: 86609356

GI number: 86609356

Start: 1986369

End: 1986860

Strand: Direct

Name: ybeY [C]

Synonym: CYB_1900

Alternate gene names: 86609356

Gene position: 1986369-1986860 (Clockwise)

Preceding gene: 86609355

Following gene: 86609357

Centisome position: 65.2

GC content: 58.13

Gene sequence:

>492_bases
ATGGATGGATTTTTAGATCTCTATCTGCAATTCAACATCCCAAGCCCGATTGAAGAAGCCACTTGGCGTCATTGGTTCGA
GATCTGGCTGAAAGAGCTGGGAGTCCAGGAGCCATGCGAGCTCAGCCTTTGCCTCACTTCCGATGAACACATCCGCCAGC
TCAACCGCGAGTTTCGCCATCTCGACGAGCCCACCGATGTGTTGGCCTTTGCCGCACAGGAGATGCTTGCCCCCTTTGGG
ATCCAAGACATAACGGGGGTACGCCTACTGGGGGATATTGTGATTTCGGTGCCCACCGCCCGCGCACAGGCCAAGGCGCA
GGGGCATCGTCTTTCGCAAGAGTTGGCCTGGTTGGCCAGCCACGGGTTGCTCCATCTGCTGGGGTGGGATCACCCGGATG
AACTGTCCCTACAGCGCATGTTGCAGCAACAGCGACAGTTGCTCGCAGCCATCCAACTGGATGGGGAGGTGGCCCATGGC
CAACAGCCCTAG

Upstream 100 bases:

>100_bases
CTACGACAGGCGCTGAAACAGCTGGCAGAGCAAAGAAGCAAAACCTGGCCCAATCTGGGCAAACCAGTAGAATAAGGGGC
GTGGTGTGAGTGAGGCCCGC

Downstream 100 bases:

>100_bases
TCGGTTGCCGGAGCGTTCTCGCCTGGCGGTGTTCCGGCGGCGCGTCCATTCCAGAGACCCAGCGCAGCCATCTGAGGCGG
ATCGGGCAGCCAGTGCCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MDGFLDLYLQFNIPSPIEEATWRHWFEIWLKELGVQEPCELSLCLTSDEHIRQLNREFRHLDEPTDVLAFAAQEMLAPFG
IQDITGVRLLGDIVISVPTARAQAKAQGHRLSQELAWLASHGLLHLLGWDHPDELSLQRMLQQQRQLLAAIQLDGEVAHG
QQP

Sequences:

>Translated_163_residues
MDGFLDLYLQFNIPSPIEEATWRHWFEIWLKELGVQEPCELSLCLTSDEHIRQLNREFRHLDEPTDVLAFAAQEMLAPFG
IQDITGVRLLGDIVISVPTARAQAKAQGHRLSQELAWLASHGLLHLLGWDHPDELSLQRMLQQQRQLLAAIQLDGEVAHG
QQP
>Mature_163_residues
MDGFLDLYLQFNIPSPIEEATWRHWFEIWLKELGVQEPCELSLCLTSDEHIRQLNREFRHLDEPTDVLAFAAQEMLAPFG
IQDITGVRLLGDIVISVPTARAQAKAQGHRLSQELAWLASHGLLHLLGWDHPDELSLQRMLQQQRQLLAAIQLDGEVAHG
QQP

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Homo sapiens, GI54607072, Length=135, Percent_Identity=34.8148148148148, Blast_Score=68, Evalue=3e-12,
Organism=Escherichia coli, GI1786880, Length=114, Percent_Identity=32.4561403508772, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_SYNJB (Q2JKD4)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_478118.1
- ProteinModelPortal:   Q2JKD4
- SMR:   Q2JKD4
- STRING:   Q2JKD4
- GeneID:   3900804
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_1900
- TIGR:   CYB_1900
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   VELAWLA
- PhylomeDB:   Q2JKD4
- ProtClustDB:   CLSK750457
- BioCyc:   SSP321332:CYB_1900-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18588; Mature: 18588

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGFLDLYLQFNIPSPIEEATWRHWFEIWLKELGVQEPCELSLCLTSDEHIRQLNREFRH
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHC
LDEPTDVLAFAAQEMLAPFGIQDITGVRLLGDIVISVPTARAQAKAQGHRLSQELAWLAS
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HGLLHLLGWDHPDELSLQRMLQQQRQLLAAIQLDGEVAHGQQP
CCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MDGFLDLYLQFNIPSPIEEATWRHWFEIWLKELGVQEPCELSLCLTSDEHIRQLNREFRH
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHC
LDEPTDVLAFAAQEMLAPFGIQDITGVRLLGDIVISVPTARAQAKAQGHRLSQELAWLAS
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HGLLHLLGWDHPDELSLQRMLQQQRQLLAAIQLDGEVAHGQQP
CCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA