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The map label for this gene is ydcM [C]

Identifier: 86609282

GI number: 86609282

Start: 1917271

End: 1918464

Strand: Direct

Name: ydcM [C]

Synonym: CYB_1826

Alternate gene names: 86609282

Gene position: 1917271-1918464 (Clockwise)

Preceding gene: 86609281

Following gene: 86609288

Centisome position: 62.93

GC content: 55.28

Gene sequence:

>1194_bases
ATGACCCAAGTCCTGACTGTAGCTTGCAAACTCAAGGTGTCCCAGTCCCAGGCCGCAAAGTTGGATGCGACAATGGATGC
CTTTGTGCAGGCGTTGAACTGGGTCAACCAAAACACACCAGAAAAAGTAGTCAACGCAGTCAAACTCCAATCCCTTTGCT
ATTACCAGATTCGCGCTCGGTTTGGCTTGTCCAGTAATCTGGCCCAGCAGGTCTGCAGACGGGTGGCAGGCGCTCGCAAA
GTGGCGAGACAGCGCAACCGTCCAGTTAAAGAGTTCAAGCGTAGGTTCGTTACCTACGATGCACGTATCTTCTCGTTTCG
CGAGAAAGACTGGACAGTGTCGCTTGCCACGGTTGATGGAAGAGAACGCTTTGAGCCAGCCATTGGCAACTACCAGAGGG
GAATGCTGGCTGGCTCTAACCCCAAATCGGCCACCCTAGTCCAGCGCAAAGACGGCTCCTACTCCATCCAGATTTGTGTC
GAGGCAGAGCCCCCCAAGCAACAGAACACCGACAAGGTGATTGGTGTTGACCTGGGACGGCGAGACATTGCACATACCTC
CGAAGGAGACAACTGGAATGGACAGCAGCTGAACAAAGTCCGAGATCACTACTGTCGGTTAAGAGCGTCTCTTCAGCGCA
AGGCCAGTAAGGGCACCCGCAGTTGCAGGCGGCGATGCCGTCAACTGCTGCAACGGCTGTCTGGTAAGGAGAGACGCTTT
CAAGCTTGGGTGAACCACAGTATCGCTAAGCGCATCGTTAAAGCAGCAAAATCTCTTTCTGCCTGCATTGCCATTGAGGA
CTTAAGCGGCATTCGAGAACGCACCAATCAACACCCCCGCAGTCGTGAGGAGCGGCGGCGTAGCAATAGCTGGGCGTTCT
ACCAGCTGCGGCGGTTTATCGAATACAAGGCTGTGAGGGCGGGTGTCAAAGTGGTAGCTGTCCCTGCGGCCTATACCTCG
CAGATCTGCCACAAGTGCCTGCATATTCATCCCGACTCCGCTCAATCCTATCGCAAGGGTAAGCAGTTCAAATGCGGGCA
CTGCGGTTGGGAAGGGGATGCGGATTTTAACGGTGCGAAGGTGATTGCGCTTTTGGGGGCTGCCGTAAACCAGCCTAGAG
GTTCGTGGTTGGCTTGCCAACTGCAGGGCTACCGAAAGCCCGCCCTGTACTGCGAAGCAGTCAGGGTCGGGTAG

Upstream 100 bases:

>100_bases
TCGAATCCTTTCGTGGGCGTCTTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAAT
GCGGAAGTTATGATAGAACC

Downstream 100 bases:

>100_bases
TTTACCCATATAAGTGGGCAACATACTCTCCGTACCCGTTGTAGGGCAAGGTGGGAACGATTTGCCACTGGGAACGGGAT
CCGAAACCGATCAAGACTTC

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MTQVLTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDGRERFEPAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICV
EAEPPKQQNTDKVIGVDLGRRDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGKERRF
QAWVNHSIAKRIVKAAKSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFIEYKAVRAGVKVVAVPAAYTS
QICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAKVIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG

Sequences:

>Translated_397_residues
MTQVLTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDGRERFEPAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICV
EAEPPKQQNTDKVIGVDLGRRDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGKERRF
QAWVNHSIAKRIVKAAKSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFIEYKAVRAGVKVVAVPAAYTS
QICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAKVIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG
>Mature_396_residues
TQVLTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGARKV
ARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDGRERFEPAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICVE
AEPPKQQNTDKVIGVDLGRRDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGKERRFQ
AWVNHSIAKRIVKAAKSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFIEYKAVRAGVKVVAVPAAYTSQ
ICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAKVIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=228, Percent_Identity=28.9473684210526, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45073; Mature: 44942

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFEPAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICVEAEPPKQQNTDKVIGVDLGR
HHHCCHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
RDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGKERRF
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
QAWVNHSIAKRIVKAAKSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHH
EYKAVRAGVKVVAVPAAYTSQICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAK
HHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHH
VIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG
HHHHHHHHHCCCCCCEEEEEECCCCCCCHHHEEEECC
>Mature Secondary Structure 
TQVLTVACKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFEPAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICVEAEPPKQQNTDKVIGVDLGR
HHHCCHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
RDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGKERRF
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
QAWVNHSIAKRIVKAAKSLSACIAIEDLSGIRERTNQHPRSREERRRSNSWAFYQLRRFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHH
EYKAVRAGVKVVAVPAAYTSQICHKCLHIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAK
HHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHH
VIALLGAAVNQPRGSWLACQLQGYRKPALYCEAVRVG
HHHHHHHHHCCCCCCEEEEEECCCCCCCHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]