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The map label for this gene is rnhB

Identifier: 86609281

GI number: 86609281

Start: 1916462

End: 1917103

Strand: Direct

Name: rnhB

Synonym: CYB_1824

Alternate gene names: 86609281

Gene position: 1916462-1917103 (Clockwise)

Preceding gene: 86609280

Following gene: 86609282

Centisome position: 62.9

GC content: 62.77

Gene sequence:

>642_bases
ATGGTGGAGCGGGCAAGGCCGAGTTTGATCTGGGAGGGATCCCTTTGGCAGCAGGGGATCCTGCGGGTGGCGGGGGTGGA
TGAGGTGGGGCGGGGAGCCCTGGCTGGGCCAGTGGTGGCGGCGGCGGTAATTTTGCCCGCCCAGATGGATCCCAAAGAAC
TGGAGGGAGTGAGGGATTCCAAACAACTGCGTCCGCAGCAACGCGCTCAATGGGCGGAACGGATTCGGCAGGTGGCTTTG
GCTGTGGGCGTTGGCAGTGCCTCTGCTGCTGAGATCGACCGGCTCAACATTCGCCAGGCCACGGTGCTAGCCATGCAGCG
GGCTTTGGCCAAGTTGGATCCAATCGAACACATTTTGCTGGATGGATTGCCGCTGGCCGAGCTGGGATCCCGGCAAACGG
CCCTGGTCAAGGGGGATCACATCAGCCTCTCCATTGCCGCTGCTTCAGTTGTGGCCAAAGTCTGGCGAGATGCCTTGATG
CAGAGCTGGGATCGGCAGTACCCCGGCTACGGCTGGCGCACCAACGCTGGCTATGGCACGCGGGAGCACCGACTGGCGTT
GCAGAACTTGGGGCCCACCCCGCAGCACCGCCGCAGCTTTGCCCCCTTGGCAGAACTGAAAGTCAGCAGATATGATGGTT
AG

Upstream 100 bases:

>100_bases
TGGGGATCAGCCCTGCCCAGCAATCTCCAGCAGCCTCCAGGCGACGGCGCTCCCGCAGCAGTTAGGCGCTGCTCTCAAGC
CCAGGGGCAGGCATGGGAGT

Downstream 100 bases:

>100_bases
TGCAGTTGCATTGCCCACGTAGCTCAGTGGACTAGAGCACTGGGTTCCGGTCCCAGGTGTCGGAGGTTCGAATCCTTTCG
TGGGCGTCTTCAGCTAGAAA

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MVERARPSLIWEGSLWQQGILRVAGVDEVGRGALAGPVVAAAVILPAQMDPKELEGVRDSKQLRPQQRAQWAERIRQVAL
AVGVGSASAAEIDRLNIRQATVLAMQRALAKLDPIEHILLDGLPLAELGSRQTALVKGDHISLSIAAASVVAKVWRDALM
QSWDRQYPGYGWRTNAGYGTREHRLALQNLGPTPQHRRSFAPLAELKVSRYDG

Sequences:

>Translated_213_residues
MVERARPSLIWEGSLWQQGILRVAGVDEVGRGALAGPVVAAAVILPAQMDPKELEGVRDSKQLRPQQRAQWAERIRQVAL
AVGVGSASAAEIDRLNIRQATVLAMQRALAKLDPIEHILLDGLPLAELGSRQTALVKGDHISLSIAAASVVAKVWRDALM
QSWDRQYPGYGWRTNAGYGTREHRLALQNLGPTPQHRRSFAPLAELKVSRYDG
>Mature_213_residues
MVERARPSLIWEGSLWQQGILRVAGVDEVGRGALAGPVVAAAVILPAQMDPKELEGVRDSKQLRPQQRAQWAERIRQVAL
AVGVGSASAAEIDRLNIRQATVLAMQRALAKLDPIEHILLDGLPLAELGSRQTALVKGDHISLSIAAASVVAKVWRDALM
QSWDRQYPGYGWRTNAGYGTREHRLALQNLGPTPQHRRSFAPLAELKVSRYDG

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family

Homologues:

Organism=Escherichia coli, GI1786380, Length=183, Percent_Identity=47.5409836065574, Blast_Score=137, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNH2_SYNJB (Q2JKK9)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_478043.1
- ProteinModelPortal:   Q2JKK9
- SMR:   Q2JKK9
- STRING:   Q2JKK9
- GeneID:   3901096
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_1824
- TIGR:   CYB_1824
- eggNOG:   COG0164
- HOGENOM:   HBG584843
- OMA:   RLGPTPI
- ProtClustDB:   CLSK844540
- BioCyc:   SSP321332:CYB_1824-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00052_B
- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337
- PANTHER:   PTHR10954

Pfam domain/function: PF01351 RNase_HII; SSF53098 RNaseH_fold

EC number: =3.1.26.4

Molecular weight: Translated: 23317; Mature: 23317

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVERARPSLIWEGSLWQQGILRVAGVDEVGRGALAGPVVAAAVILPAQMDPKELEGVRDS
CCCCCCCCEEECCCHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCH
KQLRPQQRAQWAERIRQVALAVGVGSASAAEIDRLNIRQATVLAMQRALAKLDPIEHILL
HHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
DGLPLAELGSRQTALVKGDHISLSIAAASVVAKVWRDALMQSWDRQYPGYGWRTNAGYGT
CCCCHHHHCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
REHRLALQNLGPTPQHRRSFAPLAELKVSRYDG
HHHHHHHHHCCCCHHHHHCCCCHHHHHHHCCCC
>Mature Secondary Structure
MVERARPSLIWEGSLWQQGILRVAGVDEVGRGALAGPVVAAAVILPAQMDPKELEGVRDS
CCCCCCCCEEECCCHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCH
KQLRPQQRAQWAERIRQVALAVGVGSASAAEIDRLNIRQATVLAMQRALAKLDPIEHILL
HHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
DGLPLAELGSRQTALVKGDHISLSIAAASVVAKVWRDALMQSWDRQYPGYGWRTNAGYGT
CCCCHHHHCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
REHRLALQNLGPTPQHRRSFAPLAELKVSRYDG
HHHHHHHHHCCCCHHHHHCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA