| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is dnaJ [H]
Identifier: 86609274
GI number: 86609274
Start: 1902974
End: 1903831
Strand: Reverse
Name: dnaJ [H]
Synonym: CYB_1817
Alternate gene names: 86609274
Gene position: 1903831-1902974 (Counterclockwise)
Preceding gene: 86609275
Following gene: 86609270
Centisome position: 62.49
GC content: 43.47
Gene sequence:
>858_bases ATGAAAGACCTTTACCGCGAGCTGGAATTACAGCCCAATGCAACTCTAGAAGAAATTAAAGAGAGCTACAGGCGGCTTGC CAAAGAATACCATCCCGATAAACTTCACCCAGATACACCTGTTAAGGGGCGGCAGTACATTGAGGAAAAGTTTAAGTCTA TTCAGGAAGCATACTCGGTCCTGAGTGATCCTGTGAAGCGAAAAGCCTATGACTCCCAAAGGCTTTCCCAGACTTCGCCC ACAAAAGGGAGCGGGTATGACCAAGACTTAAAAGCAGAACGCGGTTACAGCACACAAGATGGCAAACCTTGGCCCTTTGA CTTCGACAAGATAAAGGAAGCTGCAGAAGAGATAGAACGTCGTAAGAAAAACATCGAGGCCAACTATAACCAAAGAGTAG AGCAAGTTAAGTCTGAGTTAAGGAGAAACTTGATCTCTATCGGAATAAAACAAGAGGAAGCTAAAATTGATCATACCTTT GCCACCAAAAGTGACACTATACTGGGTGCCCTCTCGCTTTTAGTCCTGAGCTTGTTCATTGGTGCCTTAAGTAGCTCAAT CGGGCTTGTGCTCTTTCTAATCTCAGTTATTAGTCTTTTTATGGCCATTTTTGATAAAGGATATAGCAAGTCGCAAGTTG AGAGCGCTAAGAAGCTACAGGAAGAGGCAAAATCAGTAATAGCCCAGATAGAGAAAGATAGGAACTCGAAGCTTTCCCAG CTTGAGCTTCACTGTAGAAGTAGGATCGATCATTTTAAAGCTGTCCCTATCGAATCTATATCCCCATTTTATAAGTGGGC TGAGTGGGGAGGATCAGCTATTTTTGCTAACTGCAATGAAGGAAAAGGCAGATGCTAA
Upstream 100 bases:
>100_bases GAGTCTAGGTATTGAGTAGCACTTTGCAAGGCTTCCCCTCAGGGAATAGGATCCCCGCATCAAAGTAGCTGGCACAAGGC CCCCTGCGCCGGATCCTCCC
Downstream 100 bases:
>100_bases AAGCCTAGAAGAAAACTTGAAGATAGCGGCTGGAGTTGCTGTGGGTATTGGCATACTAGCCGCCTTATTTGGGCTGGGAG GTGGATTTCACCCATTCTGA
Product: DnaJ domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 285
Protein sequence:
>285_residues MKDLYRELELQPNATLEEIKESYRRLAKEYHPDKLHPDTPVKGRQYIEEKFKSIQEAYSVLSDPVKRKAYDSQRLSQTSP TKGSGYDQDLKAERGYSTQDGKPWPFDFDKIKEAAEEIERRKKNIEANYNQRVEQVKSELRRNLISIGIKQEEAKIDHTF ATKSDTILGALSLLVLSLFIGALSSSIGLVLFLISVISLFMAIFDKGYSKSQVESAKKLQEEAKSVIAQIEKDRNSKLSQ LELHCRSRIDHFKAVPIESISPFYKWAEWGGSAIFANCNEGKGRC
Sequences:
>Translated_285_residues MKDLYRELELQPNATLEEIKESYRRLAKEYHPDKLHPDTPVKGRQYIEEKFKSIQEAYSVLSDPVKRKAYDSQRLSQTSP TKGSGYDQDLKAERGYSTQDGKPWPFDFDKIKEAAEEIERRKKNIEANYNQRVEQVKSELRRNLISIGIKQEEAKIDHTF ATKSDTILGALSLLVLSLFIGALSSSIGLVLFLISVISLFMAIFDKGYSKSQVESAKKLQEEAKSVIAQIEKDRNSKLSQ LELHCRSRIDHFKAVPIESISPFYKWAEWGGSAIFANCNEGKGRC >Mature_285_residues MKDLYRELELQPNATLEEIKESYRRLAKEYHPDKLHPDTPVKGRQYIEEKFKSIQEAYSVLSDPVKRKAYDSQRLSQTSP TKGSGYDQDLKAERGYSTQDGKPWPFDFDKIKEAAEEIERRKKNIEANYNQRVEQVKSELRRNLISIGIKQEEAKIDHTF ATKSDTILGALSLLVLSLFIGALSSSIGLVLFLISVISLFMAIFDKGYSKSQVESAKKLQEEAKSVIAQIEKDRNSKLSQ LELHCRSRIDHFKAVPIESISPFYKWAEWGGSAIFANCNEGKGRC
Specific function: Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion. Unfolded proteins bind initially to dnaJ; upon
COG id: COG0484
COG function: function code O; DnaJ-class molecular chaperone with C-terminal Zn finger domain
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Drosophila melanogaster, GI20129487, Length=69, Percent_Identity=53.6231884057971, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24584014, Length=69, Percent_Identity=53.6231884057971, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24762799, Length=74, Percent_Identity=47.2972972972973, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012724 - InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 - InterPro: IPR001305 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C; PF00684 DnaJ_CXXCXGXG [H]
EC number: NA
Molecular weight: Translated: 32559; Mature: 32559
Theoretical pI: Translated: 8.94; Mature: 8.94
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDLYRELELQPNATLEEIKESYRRLAKEYHPDKLHPDTPVKGRQYIEEKFKSIQEAYSV CHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LSDPVKRKAYDSQRLSQTSPTKGSGYDQDLKAERGYSTQDGKPWPFDFDKIKEAAEEIER HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH RKKNIEANYNQRVEQVKSELRRNLISIGIKQEEAKIDHTFATKSDTILGALSLLVLSLFI HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH GALSSSIGLVLFLISVISLFMAIFDKGYSKSQVESAKKLQEEAKSVIAQIEKDRNSKLSQ HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH LELHCRSRIDHFKAVPIESISPFYKWAEWGGSAIFANCNEGKGRC HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC >Mature Secondary Structure MKDLYRELELQPNATLEEIKESYRRLAKEYHPDKLHPDTPVKGRQYIEEKFKSIQEAYSV CHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH LSDPVKRKAYDSQRLSQTSPTKGSGYDQDLKAERGYSTQDGKPWPFDFDKIKEAAEEIER HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH RKKNIEANYNQRVEQVKSELRRNLISIGIKQEEAKIDHTFATKSDTILGALSLLVLSLFI HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH GALSSSIGLVLFLISVISLFMAIFDKGYSKSQVESAKKLQEEAKSVIAQIEKDRNSKLSQ HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH LELHCRSRIDHFKAVPIESISPFYKWAEWGGSAIFANCNEGKGRC HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11029001 [H]