Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609243

Identifier: 86609243

GI number: 86609243

Start: 1871515

End: 1872390

Strand: Direct

Name: 86609243

Synonym: CYB_1785

Alternate gene names: NA

Gene position: 1871515-1872390 (Clockwise)

Preceding gene: 86609242

Following gene: 86609245

Centisome position: 61.43

GC content: 59.13

Gene sequence:

>876_bases
TTGAGCTTATTATTGACTAGAGTCATCCTCTATCCTTGGTTGACCCTGGGCCTGCTGGTTCCTCTGGCCTATTGGTGTTG
CTCTCGCTGGGTTTTTGCCCTGGCCGTGGTGAACTTTGGCCTGGCGTTGCAAGGGTTAGCCGAGCGTTTGGGCAGCTCTT
TCCAAGGTTTAACCCTTTTGCATCTGCTTGGTGTTGCAGTTGTGTGGGGGTTGGGTCTGTGGCACCAACGCCATAAGCCT
TGGCTAAGCCGGGTTTTAACTGAAGGAAGGGATCCAGAGCTTCCCGGCGAGCTGGAGCAAGGCTTGGATTTGGCCCCGAC
GGCCCAGAACTTGGCTCTGCTGGGGTTGGGTGTCCTGCTCTATGTCTGGAGCTTTGTCGGGACGTGGGTCGATCTTTCCG
AGGATCCCCTCTGGAACGCTGGGGATCCCTGGGCGAGCTTGTCGGCAGTGGGGTTGCTGCTGCTGACGGGCTGGGGCTGG
TGGCAGGGTTGGCAGGAGAAGAGATCCCAGCCCGTTTCGTCTTGGCTGAAGGATGCTGCTGTTCTGATTTCTCTGGTTGC
CTTGGCGCTTTTGCTGGGGATCGGCAGCGCTGTGCCTTTGAACGTGACGGCAGGAGCAGCCTTGGTCCTCTTTGCCCCCT
GGATAGTGACCTTGCTGTTGCTGGGGCTGTCAGCAGTGCTCTGCTGGGAAGGGCTACAGCAAGGGCGGCGGGGGCGCTTC
TGGCAGGGACTGTTGGGGCTAACCCTGGTGGTGCTGACCCGCTTTTTCGAGTACCCAACCGGCCTGTTGGCCAAGTCGGC
GGTGTTGGTGGCCTGTGGGATCGGGGTGATCTGGATTGGGCTGAAGTTTGAGCGGCGCATCTTCTCCAGATCCTAA

Upstream 100 bases:

>100_bases
TGCTTTGCTTTGGCTACCATGTTGGCAGACTCGAAAGTAAACAGAAAGATCAACTGGTAGTAATCCGTACTGAGCATATT
ATACATTATTTTCAGTATAG

Downstream 100 bases:

>100_bases
GTTTTCTTTCCCTTCTGGGAAGCCAAGTCCGCTTGGTTTAATTTGGTTTAACTAAGCGCACCTTAAGGCAAAGACCTAAA
TTAAGCTTAATTAAATTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MSLLLTRVILYPWLTLGLLVPLAYWCCSRWVFALAVVNFGLALQGLAERLGSSFQGLTLLHLLGVAVVWGLGLWHQRHKP
WLSRVLTEGRDPELPGELEQGLDLAPTAQNLALLGLGVLLYVWSFVGTWVDLSEDPLWNAGDPWASLSAVGLLLLTGWGW
WQGWQEKRSQPVSSWLKDAAVLISLVALALLLGIGSAVPLNVTAGAALVLFAPWIVTLLLLGLSAVLCWEGLQQGRRGRF
WQGLLGLTLVVLTRFFEYPTGLLAKSAVLVACGIGVIWIGLKFERRIFSRS

Sequences:

>Translated_291_residues
MSLLLTRVILYPWLTLGLLVPLAYWCCSRWVFALAVVNFGLALQGLAERLGSSFQGLTLLHLLGVAVVWGLGLWHQRHKP
WLSRVLTEGRDPELPGELEQGLDLAPTAQNLALLGLGVLLYVWSFVGTWVDLSEDPLWNAGDPWASLSAVGLLLLTGWGW
WQGWQEKRSQPVSSWLKDAAVLISLVALALLLGIGSAVPLNVTAGAALVLFAPWIVTLLLLGLSAVLCWEGLQQGRRGRF
WQGLLGLTLVVLTRFFEYPTGLLAKSAVLVACGIGVIWIGLKFERRIFSRS
>Mature_290_residues
SLLLTRVILYPWLTLGLLVPLAYWCCSRWVFALAVVNFGLALQGLAERLGSSFQGLTLLHLLGVAVVWGLGLWHQRHKPW
LSRVLTEGRDPELPGELEQGLDLAPTAQNLALLGLGVLLYVWSFVGTWVDLSEDPLWNAGDPWASLSAVGLLLLTGWGWW
QGWQEKRSQPVSSWLKDAAVLISLVALALLLGIGSAVPLNVTAGAALVLFAPWIVTLLLLGLSAVLCWEGLQQGRRGRFW
QGLLGLTLVVLTRFFEYPTGLLAKSAVLVACGIGVIWIGLKFERRIFSRS

Specific function: Unknown

COG id: COG4872

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31910; Mature: 31779

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLLTRVILYPWLTLGLLVPLAYWCCSRWVFALAVVNFGLALQGLAERLGSSFQGLTLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
HLLGVAVVWGLGLWHQRHKPWLSRVLTEGRDPELPGELEQGLDLAPTAQNLALLGLGVLL
HHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHH
YVWSFVGTWVDLSEDPLWNAGDPWASLSAVGLLLLTGWGWWQGWQEKRSQPVSSWLKDAA
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
VLISLVALALLLGIGSAVPLNVTAGAALVLFAPWIVTLLLLGLSAVLCWEGLQQGRRGRF
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
WQGLLGLTLVVLTRFFEYPTGLLAKSAVLVACGIGVIWIGLKFERRIFSRS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLLLTRVILYPWLTLGLLVPLAYWCCSRWVFALAVVNFGLALQGLAERLGSSFQGLTLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
HLLGVAVVWGLGLWHQRHKPWLSRVLTEGRDPELPGELEQGLDLAPTAQNLALLGLGVLL
HHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHH
YVWSFVGTWVDLSEDPLWNAGDPWASLSAVGLLLLTGWGWWQGWQEKRSQPVSSWLKDAA
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
VLISLVALALLLGIGSAVPLNVTAGAALVLFAPWIVTLLLLGLSAVLCWEGLQQGRRGRF
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
WQGLLGLTLVVLTRFFEYPTGLLAKSAVLVACGIGVIWIGLKFERRIFSRS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA