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The map label for this gene is secD [H]

Identifier: 86609216

GI number: 86609216

Start: 1840898

End: 1842244

Strand: Reverse

Name: secD [H]

Synonym: CYB_1758

Alternate gene names: 86609216

Gene position: 1842244-1840898 (Counterclockwise)

Preceding gene: 86609217

Following gene: 86609215

Centisome position: 60.47

GC content: 59.91

Gene sequence:

>1347_bases
ATGGCTAGATCCTCAGCGTCGTGGCTCAGTCGGCTCTCCTTTTTGCGAGGGCTGATCTTCATCTTGGCCGTGGTGGTTGC
CCTCGTTTACTTGGGCTTCAGCCGGGAGGTTCGCCTTGGCCTTGACCTCAAGGGAGGAACCCAGCTCACGCTACAAGCTG
TGCCCACCGAGGAGGTGCCTGAAATCACCCCCGAAGTGATGCAGGGGGTAGAGGCCGTCATCCAGCAGCGGATCAACGGG
TTGGGGGTGGCTGAGCCTCTGGTGCAGATCAGCGGCCAAGACCGCCTGTTCGTGCAGTTGCCGGGGGTGGCGGATCCGGA
TCGGGCCATTGCTCTCCTTGGAGATACAGCCCAACTGGAGTTTCGCAAGGGCTTGGTTCCCGTCGGCGCGCTGCCCCGCA
ACGAGCGGGGAGAGATAACAGCGGGGGAGGATCCGGATACTCTGTTTGAGCGGGTCGGCCTCACCGGGGATCTGCTGCGC
AATGCCTATCCCCAAGCCCCCCGCCGCGGATCCCAGAGTTGGGAGGTGCTGCTGGAGTTCAAGCCGGAGGGGGCAGAAAA
ATTTACTCAGCTCACCCGAGATCTGGCCGGAACAGAACGTCCATTGGGCATTTTTCTGGACGACGTGTTGATCAGTGCCC
CGATCGTGGGGCCGGAGTTTGCCCGCACCGGCATCACCGGCGGGACGGCGGTGATCACGGGCAATTTTACGGTGGAAACC
GCCACTGACTTGGCGGTCAAGCTCAGGGCAGGAGCGCTGCCGGTTCCCATTCAGGTGATTGAAAATCGCACTGTCGGGGC
CACTTTGGGGGAAGTGAGCGTGCGCCGCAGCCTCTATGCCGGGATCGGGGGCCTGGTGCTGGTTTTCCTCTTTATGGTGG
CCTACTATCGCCTGCCAGGGCTGATTGCGGACATTGCTCTGCTTATCTACGCCCTCTGTACCTTTGCTCTCTTCCAACTG
CTGGGGGTAACCATGACTCTGCCGGGGATCGCCGGCTTTATCCTCAGCATCGGCATGGCGGTGGATGCCAATGTGCTGAT
CTTCGAGCGCATCAAAGAAGAGTTGCGGGCCGGCAAATCCATCTACAAGTCCATTTCGGAAGGGTTTAACCGCGCCTTCA
GCAGCATCCTGGACAGCAATGTGACTACCCTTTTGGTCTGTGGCGTGCTTTTCTGGCTGGGGATGGGACTGGTGAAAGGG
TTTGCGGTAACCCTGGGCATTGGCATTCTGGTGAGCTTCTTTACGGCCATCACCTGCACCCGTAGCCTGCTCTTGGCGGC
AATGGGGATCCCCAGCTTGCGCAAACCTGAGTTTTACGGCGTTCGGATGGAGACAGCTCAATCATGA

Upstream 100 bases:

>100_bases
CTACACTGCTAAGGCGGTGTAGGGTCGGGTAGTTTACAAAGTGCCAAAATCCTAAGAGCCTCAGATCGAGTGCGACCGTG
TTCCTCACCTTCTCAGCAGT

Downstream 100 bases:

>100_bases
CGGCTCAAGAGCTATCCCCCGTAGATCCCGCCTCTCGGTTGCTCGACTATCGCTTCGACATTGTTGGACGGAGCAAGCTG
TGGTTCAGCTTGTCCTTGGC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MARSSASWLSRLSFLRGLIFILAVVVALVYLGFSREVRLGLDLKGGTQLTLQAVPTEEVPEITPEVMQGVEAVIQQRING
LGVAEPLVQISGQDRLFVQLPGVADPDRAIALLGDTAQLEFRKGLVPVGALPRNERGEITAGEDPDTLFERVGLTGDLLR
NAYPQAPRRGSQSWEVLLEFKPEGAEKFTQLTRDLAGTERPLGIFLDDVLISAPIVGPEFARTGITGGTAVITGNFTVET
ATDLAVKLRAGALPVPIQVIENRTVGATLGEVSVRRSLYAGIGGLVLVFLFMVAYYRLPGLIADIALLIYALCTFALFQL
LGVTMTLPGIAGFILSIGMAVDANVLIFERIKEELRAGKSIYKSISEGFNRAFSSILDSNVTTLLVCGVLFWLGMGLVKG
FAVTLGIGILVSFFTAITCTRSLLLAAMGIPSLRKPEFYGVRMETAQS

Sequences:

>Translated_448_residues
MARSSASWLSRLSFLRGLIFILAVVVALVYLGFSREVRLGLDLKGGTQLTLQAVPTEEVPEITPEVMQGVEAVIQQRING
LGVAEPLVQISGQDRLFVQLPGVADPDRAIALLGDTAQLEFRKGLVPVGALPRNERGEITAGEDPDTLFERVGLTGDLLR
NAYPQAPRRGSQSWEVLLEFKPEGAEKFTQLTRDLAGTERPLGIFLDDVLISAPIVGPEFARTGITGGTAVITGNFTVET
ATDLAVKLRAGALPVPIQVIENRTVGATLGEVSVRRSLYAGIGGLVLVFLFMVAYYRLPGLIADIALLIYALCTFALFQL
LGVTMTLPGIAGFILSIGMAVDANVLIFERIKEELRAGKSIYKSISEGFNRAFSSILDSNVTTLLVCGVLFWLGMGLVKG
FAVTLGIGILVSFFTAITCTRSLLLAAMGIPSLRKPEFYGVRMETAQS
>Mature_447_residues
ARSSASWLSRLSFLRGLIFILAVVVALVYLGFSREVRLGLDLKGGTQLTLQAVPTEEVPEITPEVMQGVEAVIQQRINGL
GVAEPLVQISGQDRLFVQLPGVADPDRAIALLGDTAQLEFRKGLVPVGALPRNERGEITAGEDPDTLFERVGLTGDLLRN
AYPQAPRRGSQSWEVLLEFKPEGAEKFTQLTRDLAGTERPLGIFLDDVLISAPIVGPEFARTGITGGTAVITGNFTVETA
TDLAVKLRAGALPVPIQVIENRTVGATLGEVSVRRSLYAGIGGLVLVFLFMVAYYRLPGLIADIALLIYALCTFALFQLL
GVTMTLPGIAGFILSIGMAVDANVLIFERIKEELRAGKSIYKSISEGFNRAFSSILDSNVTTLLVCGVLFWLGMGLVKGF
AVTLGIGILVSFFTAITCTRSLLLAAMGIPSLRKPEFYGVRMETAQS

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=431, Percent_Identity=36.4269141531323, Blast_Score=228, Evalue=7e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 48118; Mature: 47987

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSSASWLSRLSFLRGLIFILAVVVALVYLGFSREVRLGLDLKGGTQLTLQAVPTEEVP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCC
EITPEVMQGVEAVIQQRINGLGVAEPLVQISGQDRLFVQLPGVADPDRAIALLGDTAQLE
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCHHHH
FRKGLVPVGALPRNERGEITAGEDPDTLFERVGLTGDLLRNAYPQAPRRGSQSWEVLLEF
HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEEEE
KPEGAEKFTQLTRDLAGTERPLGIFLDDVLISAPIVGPEFARTGITGGTAVITGNFTVET
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCEEEEC
ATDLAVKLRAGALPVPIQVIENRTVGATLGEVSVRRSLYAGIGGLVLVFLFMVAYYRLPG
HHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LIADIALLIYALCTFALFQLLGVTMTLPGIAGFILSIGMAVDANVLIFERIKEELRAGKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IYKSISEGFNRAFSSILDSNVTTLLVCGVLFWLGMGLVKGFAVTLGIGILVSFFTAITCT
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSLLLAAMGIPSLRKPEFYGVRMETAQS
HHHHHHHHCCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure 
ARSSASWLSRLSFLRGLIFILAVVVALVYLGFSREVRLGLDLKGGTQLTLQAVPTEEVP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCC
EITPEVMQGVEAVIQQRINGLGVAEPLVQISGQDRLFVQLPGVADPDRAIALLGDTAQLE
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCHHHH
FRKGLVPVGALPRNERGEITAGEDPDTLFERVGLTGDLLRNAYPQAPRRGSQSWEVLLEF
HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEEEE
KPEGAEKFTQLTRDLAGTERPLGIFLDDVLISAPIVGPEFARTGITGGTAVITGNFTVET
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCEEEEC
ATDLAVKLRAGALPVPIQVIENRTVGATLGEVSVRRSLYAGIGGLVLVFLFMVAYYRLPG
HHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LIADIALLIYALCTFALFQLLGVTMTLPGIAGFILSIGMAVDANVLIFERIKEELRAGKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IYKSISEGFNRAFSSILDSNVTTLLVCGVLFWLGMGLVKGFAVTLGIGILVSFFTAITCT
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSLLLAAMGIPSLRKPEFYGVRMETAQS
HHHHHHHHCCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]