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The map label for this gene is ydcM [C]

Identifier: 86609200

GI number: 86609200

Start: 1824952

End: 1826106

Strand: Reverse

Name: ydcM [C]

Synonym: CYB_1742

Alternate gene names: 86609200

Gene position: 1826106-1824952 (Counterclockwise)

Preceding gene: 86609201

Following gene: 86609199

Centisome position: 59.94

GC content: 55.76

Gene sequence:

>1155_bases
ATGAGCCAGACTATCTCTGTACGTTGCAAGCTGATAGTCCCACAAGAGTTGCGTCAAGAAATTGACCGCACTTTGCAGGG
CTTTGCGAATGCTTGCAACCAGATTCTCGACACCGCCAAACAAAAGAACTGCTGGAACACCGCCAAGCTGCACCACTTGG
TCTATCGACCGGTAAGGGCAGCAACGGGGCTGAAAGCCAACCACGTCTGTCAGGCGCTCCGTCGGGTGATTAGCAATGCC
AAGGCGGTGAAGCAAGTCCACAAGTTCCGCCCCACCAGTCTGACTTTGGACGCTCGTACTTTTAAGTACCGAGAGTCCGA
CCAAGCCGTGGGCGTGACCCTGATGAGCGGACGGGTTTGGCTCAAGCTCAAGATTGGCGGTTATCAAATCGCTTTGCTGC
GGGGGCAAACGCCCACCAGCGCTACTCTGTCCAAGACCAAGCAAGGGGACTACTACATCAACATTGCTGTTGAGCTGGAT
ACTCCCCCAACTGGCAAAACTCCAAAGGTAATCGGAGTTGACTTGGGCAGACGGGATATCGCCACCGCCAGCAACGGACG
CTCTTGGAGTGGAGAGCACATCCAGGCCGTCCGTGACCGGTTCAGCCGTGTACGCGCCAAGGTTCAATCCAAACGCACTC
GCAGCTCTAGGAGGCTGCTGAGAAGGCTCTCTGGGAGAGAACGGCGCTACCAGACATGGCTGAACCATAACATCAGCAAA
ACCTTGGTCAGGGATGCCCAGGCTATTGGTGCGGCACTGGCTTTTGAGGACTTGACGGGCATTCGAGAGTGCCTGAATCA
GAAACCTCGGAGCAAAGCCGAACGGCGCAGGACTAACAACTGGGCGTTCTACCAGCTCAGGATGTTTGTGGCCTACAAGG
CTGCCATTGCTGGGGTGCCTGTGGTACTGGTTCCGCCTGCCTATACCAGTCAGACCTGCCACAAATGCCTGCACATCCAC
CCTGAGCGGGGCAAGTCCTACCGTAATGGTAAGTCGTTCAAGTGTGGACATTGTGGGTGGGAAGGGGACGCTGACCATAA
TGCTTCTCTTGTAATTGCTGCTCTTGGGGCGACTGTAAACTCGCCTGAAATTCCGAAACTTAGCTGCCCTCTGGGGCCGC
TAGGGATTGGGATAAAGCCCGCACCCTGCGCATAG

Upstream 100 bases:

>100_bases
GGCTGGAGGCCCGCACATAGCCGCAGGCTTGGTGTCGGGAGGAAAGCCCTCCTCCATATAGGTTTGCCGGTCAAAAGTCT
GGATAAACTACAATAAGCCC

Downstream 100 bases:

>100_bases
CGCGGGTGTCGGGTAGTTTACAAGTGCTTCACTTTCTTCCGCGTAGAGGTGGCATACCCGGCAATATCCAATTTGCGGCG
GTTGCTACACTTGTCGTCCT

Product: ISSoc8, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MSQTISVRCKLIVPQELRQEIDRTLQGFANACNQILDTAKQKNCWNTAKLHHLVYRPVRAATGLKANHVCQALRRVISNA
KAVKQVHKFRPTSLTLDARTFKYRESDQAVGVTLMSGRVWLKLKIGGYQIALLRGQTPTSATLSKTKQGDYYINIAVELD
TPPTGKTPKVIGVDLGRRDIATASNGRSWSGEHIQAVRDRFSRVRAKVQSKRTRSSRRLLRRLSGRERRYQTWLNHNISK
TLVRDAQAIGAALAFEDLTGIRECLNQKPRSKAERRRTNNWAFYQLRMFVAYKAAIAGVPVVLVPPAYTSQTCHKCLHIH
PERGKSYRNGKSFKCGHCGWEGDADHNASLVIAALGATVNSPEIPKLSCPLGPLGIGIKPAPCA

Sequences:

>Translated_384_residues
MSQTISVRCKLIVPQELRQEIDRTLQGFANACNQILDTAKQKNCWNTAKLHHLVYRPVRAATGLKANHVCQALRRVISNA
KAVKQVHKFRPTSLTLDARTFKYRESDQAVGVTLMSGRVWLKLKIGGYQIALLRGQTPTSATLSKTKQGDYYINIAVELD
TPPTGKTPKVIGVDLGRRDIATASNGRSWSGEHIQAVRDRFSRVRAKVQSKRTRSSRRLLRRLSGRERRYQTWLNHNISK
TLVRDAQAIGAALAFEDLTGIRECLNQKPRSKAERRRTNNWAFYQLRMFVAYKAAIAGVPVVLVPPAYTSQTCHKCLHIH
PERGKSYRNGKSFKCGHCGWEGDADHNASLVIAALGATVNSPEIPKLSCPLGPLGIGIKPAPCA
>Mature_383_residues
SQTISVRCKLIVPQELRQEIDRTLQGFANACNQILDTAKQKNCWNTAKLHHLVYRPVRAATGLKANHVCQALRRVISNAK
AVKQVHKFRPTSLTLDARTFKYRESDQAVGVTLMSGRVWLKLKIGGYQIALLRGQTPTSATLSKTKQGDYYINIAVELDT
PPTGKTPKVIGVDLGRRDIATASNGRSWSGEHIQAVRDRFSRVRAKVQSKRTRSSRRLLRRLSGRERRYQTWLNHNISKT
LVRDAQAIGAALAFEDLTGIRECLNQKPRSKAERRRTNNWAFYQLRMFVAYKAAIAGVPVVLVPPAYTSQTCHKCLHIHP
ERGKSYRNGKSFKCGHCGWEGDADHNASLVIAALGATVNSPEIPKLSCPLGPLGIGIKPAPCA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 42779; Mature: 42648

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTISVRCKLIVPQELRQEIDRTLQGFANACNQILDTAKQKNCWNTAKLHHLVYRPVRA
CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ATGLKANHVCQALRRVISNAKAVKQVHKFRPTSLTLDARTFKYRESDQAVGVTLMSGRVW
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHEEECCCCCEEEEEEECCEEE
LKLKIGGYQIALLRGQTPTSATLSKTKQGDYYINIAVELDTPPTGKTPKVIGVDLGRRDI
EEEEECCEEEEEEECCCCCCHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCC
ATASNGRSWSGEHIQAVRDRFSRVRAKVQSKRTRSSRRLLRRLSGRERRYQTWLNHNISK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHH
TLVRDAQAIGAALAFEDLTGIRECLNQKPRSKAERRRTNNWAFYQLRMFVAYKAAIAGVP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEHHHHHHHHHHHHHHCCC
VVLVPPAYTSQTCHKCLHIHPERGKSYRNGKSFKCGHCGWEGDADHNASLVIAALGATVN
EEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCC
SPEIPKLSCPLGPLGIGIKPAPCA
CCCCCEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQTISVRCKLIVPQELRQEIDRTLQGFANACNQILDTAKQKNCWNTAKLHHLVYRPVRA
CCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ATGLKANHVCQALRRVISNAKAVKQVHKFRPTSLTLDARTFKYRESDQAVGVTLMSGRVW
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHEEECCCCCEEEEEEECCEEE
LKLKIGGYQIALLRGQTPTSATLSKTKQGDYYINIAVELDTPPTGKTPKVIGVDLGRRDI
EEEEECCEEEEEEECCCCCCHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCC
ATASNGRSWSGEHIQAVRDRFSRVRAKVQSKRTRSSRRLLRRLSGRERRYQTWLNHNISK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHH
TLVRDAQAIGAALAFEDLTGIRECLNQKPRSKAERRRTNNWAFYQLRMFVAYKAAIAGVP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEHHHHHHHHHHHHHHCCC
VVLVPPAYTSQTCHKCLHIHPERGKSYRNGKSFKCGHCGWEGDADHNASLVIAALGATVN
EEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCC
SPEIPKLSCPLGPLGIGIKPAPCA
CCCCCEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]