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The map label for this gene is yddE [C]

Identifier: 86609082

GI number: 86609082

Start: 1692811

End: 1693674

Strand: Direct

Name: yddE [C]

Synonym: CYB_1620

Alternate gene names: 86609082

Gene position: 1692811-1693674 (Clockwise)

Preceding gene: 86609075

Following gene: 86609085

Centisome position: 55.56

GC content: 62.04

Gene sequence:

>864_bases
GTGTGGATCCCGTTGTTTCAGGTGGATGCGTTTACGGCAGTGCCTTTTGCAGGTAACCCCGCGGCGGTGTGTTTGCTGCC
TCAGGAGCTGCCGCAGGCGCTGATGCAGGCCATTGCCGCAGAGAACAATTTGTCGGAGACGGCTTTTTTACTGCCTCAGG
GATCCCAGGGCGAGGTTCCCCACTATGGGCTGCGCTGGTTTACGCCGACGACGGAGGTGGATCTCTGTGGCCACGCCACC
TTGGCTGGTGCCCATGTGCTGTTCACCGAGGTGCATCCTGAGGCGGAGAGGGTAGCCTTTTCCACCCGCAGTGGCCTGTT
GCAGGTGCGGCGGCAGGGGGATCGCCTGGCCATGGATTTTCCTGCTCGCAGTCCGGAACCTTGGCCAGAAGCCAAAGAGC
AAGTAGCAGCAGCTTTAGGAATCCCACCTGTGGAGCTATACCGGGGGGACATGGGGGTAGCGGTGCTGGCTTCGGCGGAA
CAAGTGCAGCAGGTGCAACCGGATCTGGCCCAGGTTCAAGCACTCCCCGTTCCGGGGTTGATCGTCACAGCCTCTGGGGC
GGCTCTGGGGAATGGGCCGGATTTCGTCTGCCGCGTTTTCGCTCCTCGGCTGGGGATCCCGGAGGATCCGGTGACGGGAT
CCGCCCAGTGTCTTTTGATGCCCTATTGGGCCAAACGCCTGGGTCGCTCTGAGTTACAGGCCCACCAGCTATCCAGCCGC
GGCGGGGAGCTCTGGTGTCGCGATCTCGGCTCTCGCGTGGAGATTGCCGGGCAGGCTGTGCAGGTGATCAGAGGAGAGCT
GAGGCTACCTTGGAACCCTACCGAACAAAAAACACCCCGGATATGCTTCCGAGGTGCAGGCTAG

Upstream 100 bases:

>100_bases
TCAGCGGGATCCCGCTTTTGGCGGGTACGGTCGGGGTGCGGATCCCCCTACTTTTGGTGCCGGTGTGGGATCATGGCCTG
AGTTGGGCTGGGTTGAGAAG

Downstream 100 bases:

>100_bases
GAAAGAGCTTGAGCTAGCCGAGGATTTCGGCGGCTTGAATGAGCTCCACCTGCTTTTTCTTCAGCACCAACAGCACCTGG
GTAATGGTAATGGCTGCCAG

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MWIPLFQVDAFTAVPFAGNPAAVCLLPQELPQALMQAIAAENNLSETAFLLPQGSQGEVPHYGLRWFTPTTEVDLCGHAT
LAGAHVLFTEVHPEAERVAFSTRSGLLQVRRQGDRLAMDFPARSPEPWPEAKEQVAAALGIPPVELYRGDMGVAVLASAE
QVQQVQPDLAQVQALPVPGLIVTASGAALGNGPDFVCRVFAPRLGIPEDPVTGSAQCLLMPYWAKRLGRSELQAHQLSSR
GGELWCRDLGSRVEIAGQAVQVIRGELRLPWNPTEQKTPRICFRGAG

Sequences:

>Translated_287_residues
MWIPLFQVDAFTAVPFAGNPAAVCLLPQELPQALMQAIAAENNLSETAFLLPQGSQGEVPHYGLRWFTPTTEVDLCGHAT
LAGAHVLFTEVHPEAERVAFSTRSGLLQVRRQGDRLAMDFPARSPEPWPEAKEQVAAALGIPPVELYRGDMGVAVLASAE
QVQQVQPDLAQVQALPVPGLIVTASGAALGNGPDFVCRVFAPRLGIPEDPVTGSAQCLLMPYWAKRLGRSELQAHQLSSR
GGELWCRDLGSRVEIAGQAVQVIRGELRLPWNPTEQKTPRICFRGAG
>Mature_287_residues
MWIPLFQVDAFTAVPFAGNPAAVCLLPQELPQALMQAIAAENNLSETAFLLPQGSQGEVPHYGLRWFTPTTEVDLCGHAT
LAGAHVLFTEVHPEAERVAFSTRSGLLQVRRQGDRLAMDFPARSPEPWPEAKEQVAAALGIPPVELYRGDMGVAVLASAE
QVQQVQPDLAQVQALPVPGLIVTASGAALGNGPDFVCRVFAPRLGIPEDPVTGSAQCLLMPYWAKRLGRSELQAHQLSSR
GGELWCRDLGSRVEIAGQAVQVIRGELRLPWNPTEQKTPRICFRGAG

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=287, Percent_Identity=42.5087108013937, Blast_Score=186, Evalue=3e-47,
Organism=Homo sapiens, GI74316009, Length=251, Percent_Identity=41.4342629482072, Blast_Score=167, Evalue=1e-41,
Organism=Escherichia coli, GI1787737, Length=232, Percent_Identity=31.0344827586207, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17542160, Length=311, Percent_Identity=37.9421221864952, Blast_Score=173, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI17542154, Length=311, Percent_Identity=37.9421221864952, Blast_Score=173, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI17542158, Length=314, Percent_Identity=35.6687898089172, Blast_Score=155, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI17542152, Length=314, Percent_Identity=35.6687898089172, Blast_Score=155, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6321818, Length=298, Percent_Identity=28.5234899328859, Blast_Score=89, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 30981; Mature: 30981

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIPLFQVDAFTAVPFAGNPAAVCLLPQELPQALMQAIAAENNLSETAFLLPQGSQGEVP
CCCEEEEECCEEECCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
HYGLRWFTPTTEVDLCGHATLAGAHVLFTEVHPEAERVAFSTRSGLLQVRRQGDRLAMDF
CCCEEEECCCCCEECCCCCHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEC
PARSPEPWPEAKEQVAAALGIPPVELYRGDMGVAVLASAEQVQQVQPDLAQVQALPVPGL
CCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCEEEECCHHHHHHHCCCHHHHEECCCCCE
IVTASGAALGNGPDFVCRVFAPRLGIPEDPVTGSAQCLLMPYWAKRLGRSELQAHQLSSR
EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHHCC
GGELWCRDLGSRVEIAGQAVQVIRGELRLPWNPTEQKTPRICFRGAG
CCHHHHHHCCCHHHHHHHHHHHHHCCEECCCCCCCCCCCCEEEECCC
>Mature Secondary Structure
MWIPLFQVDAFTAVPFAGNPAAVCLLPQELPQALMQAIAAENNLSETAFLLPQGSQGEVP
CCCEEEEECCEEECCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
HYGLRWFTPTTEVDLCGHATLAGAHVLFTEVHPEAERVAFSTRSGLLQVRRQGDRLAMDF
CCCEEEECCCCCEECCCCCHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEC
PARSPEPWPEAKEQVAAALGIPPVELYRGDMGVAVLASAEQVQQVQPDLAQVQALPVPGL
CCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCEEEECCHHHHHHHCCCHHHHEECCCCCE
IVTASGAALGNGPDFVCRVFAPRLGIPEDPVTGSAQCLLMPYWAKRLGRSELQAHQLSSR
EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHHCC
GGELWCRDLGSRVEIAGQAVQVIRGELRLPWNPTEQKTPRICFRGAG
CCHHHHHHCCCHHHHHHHHHHHHHCCEECCCCCCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]