Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609075

Identifier: 86609075

GI number: 86609075

Start: 1685058

End: 1685897

Strand: Direct

Name: 86609075

Synonym: CYB_1612

Alternate gene names: NA

Gene position: 1685058-1685897 (Clockwise)

Preceding gene: 86609074

Following gene: 86609082

Centisome position: 55.31

GC content: 61.07

Gene sequence:

>840_bases
ATGCAATGGAAGGGTCGGGTCGCCTACTTGGCAACCATGCATCGCAAAGAGCAGGTCATCGGCCCTCTCTTGGCCGAACA
TTTGGGGATCCAAGTCCAAGTAGCAACTTTTGACACCGACCAACTGGGCACCTTCTCGCGGGAGCGGCCCCGACCGGGGG
ATCCCATCCACACTCTGCGCCTGAAGATTGCAAGGGCTTTGCAGGATCATCCTGAAGCTCTGGGCTTGGCCAGCGAGGGG
TCCTTTGGCCCCCACCCTCAGATCCCTTGGATCCCTTGGAATCAGGAGTGGGTCATGCTCAGGGTTTTTGAACCCGGCGC
GGAGCCCTTGGAGCTGGTCGGCTATGCAGAGAGCACCCAAACCAATTTCAGCCATCGCTGGGTGCAGAGCTGGGCAGAAG
CGCTGGACTTTGCCCAAAGGGCGGGTTTTCCCCAGCATGCCCTGATTGCCCTCGACCGGCCAGAAAAGCCTCAGGTCATC
CACAAAGGAATCCAAGATGAAGAGACCCTGAAGCAGGTGGTGGGGGAGATGCTGACTCGGCAAGGGGGCCTTCATCTGGA
AACCGACATGCGGGCCATGTGCAACCCAACCCGGCTCCAGGTTATCGCAGCCGCCACCCAAAACCTAATCGCCAAGGCCC
AAAGCCTGTGCCCGGCCTGCGGCACTCCCGGCTACTGGCGGATCCGCTCGATCTCTGGACTGCCCTGCGGCCAGTGTGGC
GCCCCCACCCCTGTAACCAAGGCGTGGGTATATGGCTGTGCCCGCTGTTCCCATACCCACACCGAGCCTGTGGCAGAGCC
CTGGGCGGATCCCGCTCAGTGTGCTTTCTGTAATCCCTAG

Upstream 100 bases:

>100_bases
CTTGCCGCTCGAGGCCAGTCCCCTGGTTTGAGTAACCCCAATTGGCCTGAGCCACAAAGCTGCGGGATCCGTTTGCCAGA
TCTAGGTTAAGTCTGAGTCT

Downstream 100 bases:

>100_bases
CCTTGTCTTGAGCCCGACCTCAGGCTCTCCAGAGCCGGCATTGTCATCCCCGCAGAGGAGTTGTAGTCGTTTCAGGTTAG
GGTGAGACACCTGGGCTATA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MQWKGRVAYLATMHRKEQVIGPLLAEHLGIQVQVATFDTDQLGTFSRERPRPGDPIHTLRLKIARALQDHPEALGLASEG
SFGPHPQIPWIPWNQEWVMLRVFEPGAEPLELVGYAESTQTNFSHRWVQSWAEALDFAQRAGFPQHALIALDRPEKPQVI
HKGIQDEETLKQVVGEMLTRQGGLHLETDMRAMCNPTRLQVIAAATQNLIAKAQSLCPACGTPGYWRIRSISGLPCGQCG
APTPVTKAWVYGCARCSHTHTEPVAEPWADPAQCAFCNP

Sequences:

>Translated_279_residues
MQWKGRVAYLATMHRKEQVIGPLLAEHLGIQVQVATFDTDQLGTFSRERPRPGDPIHTLRLKIARALQDHPEALGLASEG
SFGPHPQIPWIPWNQEWVMLRVFEPGAEPLELVGYAESTQTNFSHRWVQSWAEALDFAQRAGFPQHALIALDRPEKPQVI
HKGIQDEETLKQVVGEMLTRQGGLHLETDMRAMCNPTRLQVIAAATQNLIAKAQSLCPACGTPGYWRIRSISGLPCGQCG
APTPVTKAWVYGCARCSHTHTEPVAEPWADPAQCAFCNP
>Mature_279_residues
MQWKGRVAYLATMHRKEQVIGPLLAEHLGIQVQVATFDTDQLGTFSRERPRPGDPIHTLRLKIARALQDHPEALGLASEG
SFGPHPQIPWIPWNQEWVMLRVFEPGAEPLELVGYAESTQTNFSHRWVQSWAEALDFAQRAGFPQHALIALDRPEKPQVI
HKGIQDEETLKQVVGEMLTRQGGLHLETDMRAMCNPTRLQVIAAATQNLIAKAQSLCPACGTPGYWRIRSISGLPCGQCG
APTPVTKAWVYGCARCSHTHTEPVAEPWADPAQCAFCNP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30975; Mature: 30975

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWKGRVAYLATMHRKEQVIGPLLAEHLGIQVQVATFDTDQLGTFSRERPRPGDPIHTLR
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCCCCCCCCCHHHHHH
LKIARALQDHPEALGLASEGSFGPHPQIPWIPWNQEWVMLRVFEPGAEPLELVGYAESTQ
HHHHHHHHHCHHHHCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCCHHHHEECCHHCC
TNFSHRWVQSWAEALDFAQRAGFPQHALIALDRPEKPQVIHKGIQDEETLKQVVGEMLTR
CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHH
QGGLHLETDMRAMCNPTRLQVIAAATQNLIAKAQSLCPACGTPGYWRIRSISGLPCGQCG
CCCCEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC
APTPVTKAWVYGCARCSHTHTEPVAEPWADPAQCAFCNP
CCCCHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQWKGRVAYLATMHRKEQVIGPLLAEHLGIQVQVATFDTDQLGTFSRERPRPGDPIHTLR
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCCCCCCCCCHHHHHH
LKIARALQDHPEALGLASEGSFGPHPQIPWIPWNQEWVMLRVFEPGAEPLELVGYAESTQ
HHHHHHHHHCHHHHCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCCHHHHEECCHHCC
TNFSHRWVQSWAEALDFAQRAGFPQHALIALDRPEKPQVIHKGIQDEETLKQVVGEMLTR
CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHH
QGGLHLETDMRAMCNPTRLQVIAAATQNLIAKAQSLCPACGTPGYWRIRSISGLPCGQCG
CCCCEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC
APTPVTKAWVYGCARCSHTHTEPVAEPWADPAQCAFCNP
CCCCHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA