| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is acnB [H]
Identifier: 86609052
GI number: 86609052
Start: 1657684
End: 1660308
Strand: Direct
Name: acnB [H]
Synonym: CYB_1587
Alternate gene names: 86609052
Gene position: 1657684-1660308 (Clockwise)
Preceding gene: 86609051
Following gene: 86609053
Centisome position: 54.41
GC content: 62.44
Gene sequence:
>2625_bases ATGCTGGCCGAATACCGCCAACACGCCGCTGCCCGCGAGGCCCAAGGGATCCCGCCGCTGCCCTTAAACGCTGCCCAGAC CAGCCAGGTGTGCGAGCTCCTGAAGGCCCCGCCTGCTGGCGAAGAAGCCTTTTTGTTGCACCTCTTAACAGAGCGCGTCC CGCCGGGGGTCGATGAAGCCGCCTATGTGAAAGCGGGCTTTTTGGCCGCTGTGGCCAAGGAGGAGGTTGAATCCCCGTTG ATCACTCCCCTGCGGGCGGTGGAGCTCTTGGGCACGATGCTGGGGGGCTACAACGTTCAGGTTTTGCTGGATCTCTTACA GGATCCGCGCCAGGAGATTGCAGCAGCAGCAGCCCGCGCCCTCAGCCACACGCTGCTCATCTTCGATGCCTTTCACGATG TGCTGGAGCTGAGCCAAGCCGGCAATGCCTATGCCCGACAGGTGATCGAGTCTTGGGCCAAGGGCGAATGGTTTACCGCC AAAGCTCCCCTGGCCGCAGCAATCACTGTAACAGTGTTCAAGGTTGCCGGCGAGATCAACACCGACGACCTTTCCCCCGC CGCCCACGCCACCACCCGCCCGGATATCCCCCTCCACGCCCAAGCCATGCTGGAGTCCCGCGCTCCAGGATCCCTGGTTA CCATTGCCGAGCTGAAGCGCCGCGGCCATCCCGTTGCCTTTGTGGGGGATGTGGTAGGCACGGGATCCTCCCGCAAATCC GCCCTCAACTCGCTGCTCTGGCACATCGGCCACGACATTCCCCATGTGCCCAACAAGCGGGCCGGCGGGGTCATCCTGGG GGGCACCATCGCGCCCATCTTCTTCAACACCGCCGAAGATGCCGGGGCCTTGCCCATCCAGTGCGATGTCTCCCGCCTGG AAACCGGCATGGTGGTTACCATTTGCCCCTACGAAGGTGTGATCCGCTCTGAGGCCGGCCAGGTTCTCTCCACCTTTTCC CTGCGGCCCGTAACCCTCCCCGACGAAGTGCGGGCGGGGGGACGTATTCCCCTGTTGATTGGCCGTGCCCTCACCGACAA AACCCGCCAAGCCTTGGGTTTACCTCCCTCCACCTTGTTTATCCGCCCCACTCCACCGGCAGACACCGGCAAAGGCTATA CCCTAGCGCAAAAAATCGTGGGCAAAGCCTGTGGGCTGCCAGGCGTGCGCCCGGGCACCAGTTGTGAGCCCCTCATTACC ACGGTGGGATCCCAGGACACCACCGGCCCCATGACCCGCGATGAGCTGAAGGAGCTGGCCTGTCTGGGCTTCAACGCCGA CCTGGTGCTGCAGAGCTTCTGCCACACCGCCGCCTATCCCAAGCCGGTGGACATCCAGATCCACAAAGAGCTGCCCGACT TTTTCGCTTCCCGCGGGGGCGTTGTCCTGCGTCCCGGCGATGGCATTATCCACTCCTGGCTGAATCGCATGTTGCTGCCC GACACCGTGGGCACAGGGGGCGACTCCCACACCCGCTTCCCCTTGGGGATCTCCTTCCCGGCAGGATCCGGTCTGGTGGC CTTTGCCGCCGCCATGGGGGTGATGCCCTTGGACATGCCGGAATCGGTGCTGGTGCGCTTTACAGGTGAATTGCAGCCGG GGATCACCCTGCGGGACATTGTCCATGCCATCCCCTACGTGGCCATTCAGAGGGGCCTGTTGACCGTTGAGAAAAAAGGC AAGAAAAACGTCTTTGCCGGGCGCATCATGGAGATCGAGGGCCTGCCGGATCTGAAGGTGGAGCAAGCTTTTGAGTTTAC CGATGCCTCGGCAGAGCGCAACTGTGCCGGCTGTACCATCAAGCTGAGCATCGAGACGGTCTCAGAATATCTGCGCTCCA ACGTGGTGCTGCTGAAGAACATGATCGCCCGCGGCTATCAGGATGCGAGAACCTTGCTGCGGCGCATCGCCAAAATGGAA GCATGGCTGGCCAACCCCACCCTCCTGGAGGCGGATGCCGACGCCGAATACGCCGAAGTCATCGAAATTGACCTCAGCAC CATCACCGAGCCAATTGTCTGTGCCCCCAACGATCCCGACAAGGTGATGACCCTGAGCGAAGTCCATGCCCAACACGCCG CCGGCAACCCCGATACGCCGATCAAGATTGACGAAGTTTTCATCGGCTCCTGCATGACCAACATCGGCCACTACCGCGCC GCCGCCAAAATCCTGGAAGGCCAAGGGCGGGCCAAGGTGCGCCAATTCTGGATCTGTCCGCCCACCCGCATGGATGAGGC ACAACTGCGCTCGGAAGGCGTATACGGCATCTTTGCTGCCGCCGGGGCCAGAACGGAAATGCCGGGATGCAGCTTGTGTA TGGGCAACCAAGCCCGCGTGGAAGACGGGGCCACCGTCATGTCCACCTCCACCCGCAACTTCAACAACCGCATGGGCAAA GACGCGCGGGTTTATCTGGGATCCGCCGAGCTGGCCGCCGCCTGCGCCCTTTTGGGCCGGATCCCCACCCCTGAGGAATA CCAAGAGATCGTCTCCACCAAGATCCAGCCCTTTGCCGGCGAGCTGTACCGCTACCTCAACTTCCACGAGATCCCTGGCT TTGAGGACGAAGGACGGGTCATCCCGCGGCAGCACGTGGAGGAGCTGTCCAGGAGCCGTTCTTGA
Upstream 100 bases:
>100_bases CAAGCTGAGTTACCGCCAGCGGATGGGATCCCTTCTCGAGGACCTTTCCTCTGCCGAGCTAGCGGTAGAATAAATACCCA CGTCGAGTGCCTAAACCCCC
Downstream 100 bases:
>100_bases GCGAGAATAGGGGCTAGCTGCCCTGATAGCATGGCAGGGATCGCCCCATTGCCCTGGAGAAAGCTCAATGGCCCTGAATC CAAAGAGGATCCGCCGCATC
Product: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Products: NA
Alternate protein names: Aconitase 2; 2-methylisocitrate dehydratase; Citrate hydro-lyase 2 [H]
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MLAEYRQHAAAREAQGIPPLPLNAAQTSQVCELLKAPPAGEEAFLLHLLTERVPPGVDEAAYVKAGFLAAVAKEEVESPL ITPLRAVELLGTMLGGYNVQVLLDLLQDPRQEIAAAAARALSHTLLIFDAFHDVLELSQAGNAYARQVIESWAKGEWFTA KAPLAAAITVTVFKVAGEINTDDLSPAAHATTRPDIPLHAQAMLESRAPGSLVTIAELKRRGHPVAFVGDVVGTGSSRKS ALNSLLWHIGHDIPHVPNKRAGGVILGGTIAPIFFNTAEDAGALPIQCDVSRLETGMVVTICPYEGVIRSEAGQVLSTFS LRPVTLPDEVRAGGRIPLLIGRALTDKTRQALGLPPSTLFIRPTPPADTGKGYTLAQKIVGKACGLPGVRPGTSCEPLIT TVGSQDTTGPMTRDELKELACLGFNADLVLQSFCHTAAYPKPVDIQIHKELPDFFASRGGVVLRPGDGIIHSWLNRMLLP DTVGTGGDSHTRFPLGISFPAGSGLVAFAAAMGVMPLDMPESVLVRFTGELQPGITLRDIVHAIPYVAIQRGLLTVEKKG KKNVFAGRIMEIEGLPDLKVEQAFEFTDASAERNCAGCTIKLSIETVSEYLRSNVVLLKNMIARGYQDARTLLRRIAKME AWLANPTLLEADADAEYAEVIEIDLSTITEPIVCAPNDPDKVMTLSEVHAQHAAGNPDTPIKIDEVFIGSCMTNIGHYRA AAKILEGQGRAKVRQFWICPPTRMDEAQLRSEGVYGIFAAAGARTEMPGCSLCMGNQARVEDGATVMSTSTRNFNNRMGK DARVYLGSAELAAACALLGRIPTPEEYQEIVSTKIQPFAGELYRYLNFHEIPGFEDEGRVIPRQHVEELSRSRS
Sequences:
>Translated_874_residues MLAEYRQHAAAREAQGIPPLPLNAAQTSQVCELLKAPPAGEEAFLLHLLTERVPPGVDEAAYVKAGFLAAVAKEEVESPL ITPLRAVELLGTMLGGYNVQVLLDLLQDPRQEIAAAAARALSHTLLIFDAFHDVLELSQAGNAYARQVIESWAKGEWFTA KAPLAAAITVTVFKVAGEINTDDLSPAAHATTRPDIPLHAQAMLESRAPGSLVTIAELKRRGHPVAFVGDVVGTGSSRKS ALNSLLWHIGHDIPHVPNKRAGGVILGGTIAPIFFNTAEDAGALPIQCDVSRLETGMVVTICPYEGVIRSEAGQVLSTFS LRPVTLPDEVRAGGRIPLLIGRALTDKTRQALGLPPSTLFIRPTPPADTGKGYTLAQKIVGKACGLPGVRPGTSCEPLIT TVGSQDTTGPMTRDELKELACLGFNADLVLQSFCHTAAYPKPVDIQIHKELPDFFASRGGVVLRPGDGIIHSWLNRMLLP DTVGTGGDSHTRFPLGISFPAGSGLVAFAAAMGVMPLDMPESVLVRFTGELQPGITLRDIVHAIPYVAIQRGLLTVEKKG KKNVFAGRIMEIEGLPDLKVEQAFEFTDASAERNCAGCTIKLSIETVSEYLRSNVVLLKNMIARGYQDARTLLRRIAKME AWLANPTLLEADADAEYAEVIEIDLSTITEPIVCAPNDPDKVMTLSEVHAQHAAGNPDTPIKIDEVFIGSCMTNIGHYRA AAKILEGQGRAKVRQFWICPPTRMDEAQLRSEGVYGIFAAAGARTEMPGCSLCMGNQARVEDGATVMSTSTRNFNNRMGK DARVYLGSAELAAACALLGRIPTPEEYQEIVSTKIQPFAGELYRYLNFHEIPGFEDEGRVIPRQHVEELSRSRS >Mature_874_residues MLAEYRQHAAAREAQGIPPLPLNAAQTSQVCELLKAPPAGEEAFLLHLLTERVPPGVDEAAYVKAGFLAAVAKEEVESPL ITPLRAVELLGTMLGGYNVQVLLDLLQDPRQEIAAAAARALSHTLLIFDAFHDVLELSQAGNAYARQVIESWAKGEWFTA KAPLAAAITVTVFKVAGEINTDDLSPAAHATTRPDIPLHAQAMLESRAPGSLVTIAELKRRGHPVAFVGDVVGTGSSRKS ALNSLLWHIGHDIPHVPNKRAGGVILGGTIAPIFFNTAEDAGALPIQCDVSRLETGMVVTICPYEGVIRSEAGQVLSTFS LRPVTLPDEVRAGGRIPLLIGRALTDKTRQALGLPPSTLFIRPTPPADTGKGYTLAQKIVGKACGLPGVRPGTSCEPLIT TVGSQDTTGPMTRDELKELACLGFNADLVLQSFCHTAAYPKPVDIQIHKELPDFFASRGGVVLRPGDGIIHSWLNRMLLP DTVGTGGDSHTRFPLGISFPAGSGLVAFAAAMGVMPLDMPESVLVRFTGELQPGITLRDIVHAIPYVAIQRGLLTVEKKG KKNVFAGRIMEIEGLPDLKVEQAFEFTDASAERNCAGCTIKLSIETVSEYLRSNVVLLKNMIARGYQDARTLLRRIAKME AWLANPTLLEADADAEYAEVIEIDLSTITEPIVCAPNDPDKVMTLSEVHAQHAAGNPDTPIKIDEVFIGSCMTNIGHYRA AAKILEGQGRAKVRQFWICPPTRMDEAQLRSEGVYGIFAAAGARTEMPGCSLCMGNQARVEDGATVMSTSTRNFNNRMGK DARVYLGSAELAAACALLGRIPTPEEYQEIVSTKIQPFAGELYRYLNFHEIPGFEDEGRVIPRQHVEELSRSRS
Specific function: Catalyzes the isomerization of citrate to isocitrate via cis-aconitate as well as the dehydration of 2-methylisocitrate to cis-2-methylaconitate [H]
COG id: COG1049
COG function: function code C; Aconitase B
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aconitase/IPM isomerase family [H]
Homologues:
Organism=Escherichia coli, GI2367097, Length=868, Percent_Identity=66.4746543778802, Blast_Score=1131, Evalue=0.0, Organism=Escherichia coli, GI1786259, Length=375, Percent_Identity=27.2, Blast_Score=89, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6323335, Length=407, Percent_Identity=26.5356265356265, Blast_Score=86, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6321429, Length=370, Percent_Identity=27.5675675675676, Blast_Score=80, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6320440, Length=233, Percent_Identity=31.7596566523605, Blast_Score=72, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015931 - InterPro: IPR015937 - InterPro: IPR001030 - InterPro: IPR015928 - InterPro: IPR018136 - InterPro: IPR004406 - InterPro: IPR015930 - InterPro: IPR015933 - InterPro: IPR015929 [H]
Pfam domain/function: PF00330 Aconitase; PF06434 Aconitase_2_N; PF11791 Aconitase_B_N [H]
EC number: =4.2.1.3; =4.2.1.99 [H]
Molecular weight: Translated: 94095; Mature: 94095
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: PS00450 ACONITASE_1 ; PS01244 ACONITASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAEYRQHAAAREAQGIPPLPLNAAQTSQVCELLKAPPAGEEAFLLHLLTERVPPGVDEA CCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCH AYVKAGFLAAVAKEEVESPLITPLRAVELLGTMLGGYNVQVLLDLLQDPRQEIAAAAARA HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHH LSHTLLIFDAFHDVLELSQAGNAYARQVIESWAKGEWFTAKAPLAAAITVTVFKVAGEIN HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCC TDDLSPAAHATTRPDIPLHAQAMLESRAPGSLVTIAELKRRGHPVAFVGDVVGTGSSRKS CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEHHHHHHCCCCEEEECHHHCCCCHHHH ALNSLLWHIGHDIPHVPNKRAGGVILGGTIAPIFFNTAEDAGALPIQCDVSRLETGMVVT HHHHHHHHHCCCCCCCCCCCCCCEEECCEEEEEEEECCCCCCCCCEEEEHHHHCCCCEEE ICPYEGVIRSEAGQVLSTFSLRPVTLPDEVRAGGRIPLLIGRALTDKTRQALGLPPSTLF ECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEECHHHHHHHHHHHCCCCCEEE IRPTPPADTGKGYTLAQKIVGKACGLPGVRPGTSCEPLITTVGSQDTTGPMTRDELKELA EECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHEECCCCCCCCCCCHHHHHHHH CLGFNADLVLQSFCHTAAYPKPVDIQIHKELPDFFASRGGVVLRPGDGIIHSWLNRMLLP HCCCCHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCC DTVGTGGDSHTRFPLGISFPAGSGLVAFAAAMGVMPLDMPESVLVRFTGELQPGITLRDI CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHEECCCCCCCCHHHHH VHAIPYVAIQRGLLTVEKKGKKNVFAGRIMEIEGLPDLKVEQAFEFTDASAERNCAGCTI HHHHHHHHHHHCCEEEECCCCCCEEECEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEE KLSIETVSEYLRSNVVLLKNMIARGYQDARTLLRRIAKMEAWLANPTLLEADADAEYAEV EEEHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHH IEIDLSTITEPIVCAPNDPDKVMTLSEVHAQHAAGNPDTPIKIDEVFIGSCMTNIGHYRA EEEEHHHCCCCEEECCCCCHHHEEHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHH AAKILEGQGRAKVRQFWICPPTRMDEAQLRSEGVYGIFAAAGARTEMPGCSLCMGNQARV HHHHHHCCCCCEEEEEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCEECCCCCCC EDGATVMSTSTRNFNNRMGKDARVYLGSAELAAACALLGRIPTPEEYQEIVSTKIQPFAG CCCCEEEECCCCCHHHHCCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHH ELYRYLNFHEIPGFEDEGRVIPRQHVEELSRSRS HHHHHHCHHCCCCCCCCCCCCCHHHHHHHHHCCC >Mature Secondary Structure MLAEYRQHAAAREAQGIPPLPLNAAQTSQVCELLKAPPAGEEAFLLHLLTERVPPGVDEA CCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCH AYVKAGFLAAVAKEEVESPLITPLRAVELLGTMLGGYNVQVLLDLLQDPRQEIAAAAARA HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHH LSHTLLIFDAFHDVLELSQAGNAYARQVIESWAKGEWFTAKAPLAAAITVTVFKVAGEIN HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCC TDDLSPAAHATTRPDIPLHAQAMLESRAPGSLVTIAELKRRGHPVAFVGDVVGTGSSRKS CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEHHHHHHCCCCEEEECHHHCCCCHHHH ALNSLLWHIGHDIPHVPNKRAGGVILGGTIAPIFFNTAEDAGALPIQCDVSRLETGMVVT HHHHHHHHHCCCCCCCCCCCCCCEEECCEEEEEEEECCCCCCCCCEEEEHHHHCCCCEEE ICPYEGVIRSEAGQVLSTFSLRPVTLPDEVRAGGRIPLLIGRALTDKTRQALGLPPSTLF ECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEECHHHHHHHHHHHCCCCCEEE IRPTPPADTGKGYTLAQKIVGKACGLPGVRPGTSCEPLITTVGSQDTTGPMTRDELKELA EECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHEECCCCCCCCCCCHHHHHHHH CLGFNADLVLQSFCHTAAYPKPVDIQIHKELPDFFASRGGVVLRPGDGIIHSWLNRMLLP HCCCCHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCC DTVGTGGDSHTRFPLGISFPAGSGLVAFAAAMGVMPLDMPESVLVRFTGELQPGITLRDI CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHEECCCCCCCCHHHHH VHAIPYVAIQRGLLTVEKKGKKNVFAGRIMEIEGLPDLKVEQAFEFTDASAERNCAGCTI HHHHHHHHHHHCCEEEECCCCCCEEECEEEEECCCCCCCHHHHHHHCCCCCCCCCCCEEE KLSIETVSEYLRSNVVLLKNMIARGYQDARTLLRRIAKMEAWLANPTLLEADADAEYAEV EEEHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHH IEIDLSTITEPIVCAPNDPDKVMTLSEVHAQHAAGNPDTPIKIDEVFIGSCMTNIGHYRA EEEEHHHCCCCEEECCCCCHHHEEHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHH AAKILEGQGRAKVRQFWICPPTRMDEAQLRSEGVYGIFAAAGARTEMPGCSLCMGNQARV HHHHHHCCCCCEEEEEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCEECCCCCCC EDGATVMSTSTRNFNNRMGKDARVYLGSAELAAACALLGRIPTPEEYQEIVSTKIQPFAG CCCCEEEECCCCCHHHHCCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHH ELYRYLNFHEIPGFEDEGRVIPRQHVEELSRSRS HHHHHHCHHCCCCCCCCCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]