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The map label for this gene is tsf

Identifier: 86609000

GI number: 86609000

Start: 1610316

End: 1611092

Strand: Direct

Name: tsf

Synonym: CYB_1535

Alternate gene names: 86609000

Gene position: 1610316-1611092 (Clockwise)

Preceding gene: 86608999

Following gene: 86609001

Centisome position: 52.85

GC content: 54.05

Gene sequence:

>777_bases
ATGAGCATTGATGCCAAACTGGTCAAAGAGCTGCGCGAAAAGACGGGCGCAGGCATGATGGACTGCAAAAAAGCCCTGGA
AGATTCCGGTGGCGATATGGAGAAAGCCATCACCTGGCTGCGACAGAAAGGGTTGGCAGGGGCAGCCAAAAAGGCCAGTC
GCGTCGCGGCAGAGGGGGCAGTTGACAGCTACATCCACTTCGGCAATCGAATTGGGGTGTTGGTGGAAGTGAACTGCGAG
ACGGACTTCGTGGCCCGCAACGAAGATTTCAAGAAATTGGTGCAAGACATCGCCAAGCAGATTGCCGCCTGCCAAAACGT
AGAATACGTCAGCGTTGACCAGATCCCTGCTGAAGTGGTAGAGCGGGAAAAAGCCATTGAAATGGGCAAAGAAGATCTGG
CCAATAAGCCGGAGAACATACGCGAGAAGATCGTGCAAGGTCGCATCGAAAAGCGACTGAAAGAATTGTCTCTGTTGGAT
CAACCCTTCATTAAAGATTCCTCGATCACCGTAGAGGAATTGGTGAAGCAGCACATTGCCAAACTGGGGGAAAACATTCG
GGTGCGGCGGTTTGTGCGCTTTGTCCTGGGAGAGGGGATCGAGAAAGAAGAAGTGGATTTTGCTGCTGAGGTTGCCGCTC
AAGCCGGTCTCAAGCCGGCAGAGGCCCCCAAAGTGGAAGAGACTCCACCCGCTCCTCCTGAAGAACCTGCCCCAGAACCG
GCCCCTGCTGCCGAGAGCAAGCCGGCCAAAAAAGGCTCCGCCAAGAAAAAGAAATAG

Upstream 100 bases:

>100_bases
CGTGTATTCTTGAAATCTAGGTTTACAATTCTACCGAAGCCCGCTCATTCTCACTCATATCCCGCCACATTCTTCCCGTT
CTTTCATTCGAGGAGCCCTC

Downstream 100 bases:

>100_bases
CCGGTCAAGGCTGAGCTGTAGGGCCATGTCGGCGGTGCAGAGGCGTTGAAACTGCGTTATGGAGAGTGTGGGCACCTCTA
TGTCGGCAGTTCTATAACCA

Product: elongation factor Ts

Products: NA

Alternate protein names: EF-Ts

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSIDAKLVKELREKTGAGMMDCKKALEDSGGDMEKAITWLRQKGLAGAAKKASRVAAEGAVDSYIHFGNRIGVLVEVNCE
TDFVARNEDFKKLVQDIAKQIAACQNVEYVSVDQIPAEVVEREKAIEMGKEDLANKPENIREKIVQGRIEKRLKELSLLD
QPFIKDSSITVEELVKQHIAKLGENIRVRRFVRFVLGEGIEKEEVDFAAEVAAQAGLKPAEAPKVEETPPAPPEEPAPEP
APAAESKPAKKGSAKKKK

Sequences:

>Translated_258_residues
MSIDAKLVKELREKTGAGMMDCKKALEDSGGDMEKAITWLRQKGLAGAAKKASRVAAEGAVDSYIHFGNRIGVLVEVNCE
TDFVARNEDFKKLVQDIAKQIAACQNVEYVSVDQIPAEVVEREKAIEMGKEDLANKPENIREKIVQGRIEKRLKELSLLD
QPFIKDSSITVEELVKQHIAKLGENIRVRRFVRFVLGEGIEKEEVDFAAEVAAQAGLKPAEAPKVEETPPAPPEEPAPEP
APAAESKPAKKGSAKKKK
>Mature_257_residues
SIDAKLVKELREKTGAGMMDCKKALEDSGGDMEKAITWLRQKGLAGAAKKASRVAAEGAVDSYIHFGNRIGVLVEVNCET
DFVARNEDFKKLVQDIAKQIAACQNVEYVSVDQIPAEVVEREKAIEMGKEDLANKPENIREKIVQGRIEKRLKELSLLDQ
PFIKDSSITVEELVKQHIAKLGENIRVRRFVRFVLGEGIEKEEVDFAAEVAAQAGLKPAEAPKVEETPPAPPEEPAPEPA
PAAESKPAKKGSAKKKK

Specific function: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome

COG id: COG0264

COG function: function code J; Translation elongation factor Ts

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EF-Ts family

Homologues:

Organism=Homo sapiens, GI291084500, Length=189, Percent_Identity=35.978835978836, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI291084502, Length=107, Percent_Identity=44.8598130841121, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI291084498, Length=107, Percent_Identity=44.8598130841121, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI171846268, Length=107, Percent_Identity=44.8598130841121, Blast_Score=84, Evalue=1e-16,
Organism=Escherichia coli, GI1786366, Length=163, Percent_Identity=42.9447852760736, Blast_Score=100, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17561440, Length=194, Percent_Identity=30.9278350515464, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI19921466, Length=113, Percent_Identity=39.8230088495575, Blast_Score=79, Evalue=4e-15,

Paralogues:

None

Copy number: 2670 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1100 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 4173 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 14563 Molecules/Cell In: Growth Phase, Gluco

Swissprot (AC and ID): EFTS_SYNJB (Q2JLB2)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_477762.1
- ProteinModelPortal:   Q2JLB2
- SMR:   Q2JLB2
- STRING:   Q2JLB2
- GeneID:   3902904
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_1535
- TIGR:   CYB_1535
- eggNOG:   COG0264
- HOGENOM:   HBG713289
- OMA:   NVEYVSI
- ProtClustDB:   PRK12332
- BioCyc:   SSP321332:CYB_1535-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00050
- InterPro:   IPR001816
- InterPro:   IPR014039
- InterPro:   IPR018101
- InterPro:   IPR009060
- InterPro:   IPR000449
- Gene3D:   G3DSA:3.30.479.20
- PANTHER:   PTHR11741
- TIGRFAMs:   TIGR00116

Pfam domain/function: PF00889 EF_TS; PF00627 UBA; SSF54713 EF_TS; SSF46934 UBA_like

EC number: NA

Molecular weight: Translated: 28310; Mature: 28179

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS01126 EF_TS_1; PS01127 EF_TS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIDAKLVKELREKTGAGMMDCKKALEDSGGDMEKAITWLRQKGLAGAAKKASRVAAEGA
CCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VDSYIHFGNRIGVLVEVNCETDFVARNEDFKKLVQDIAKQIAACQNVEYVSVDQIPAEVV
HHHHHHHCCCEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHH
EREKAIEMGKEDLANKPENIREKIVQGRIEKRLKELSLLDQPFIKDSSITVEELVKQHIA
HHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
KLGENIRVRRFVRFVLGEGIEKEEVDFAAEVAAQAGLKPAEAPKVEETPPAPPEEPAPEP
HHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
APAAESKPAKKGSAKKKK
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIDAKLVKELREKTGAGMMDCKKALEDSGGDMEKAITWLRQKGLAGAAKKASRVAAEGA
CCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VDSYIHFGNRIGVLVEVNCETDFVARNEDFKKLVQDIAKQIAACQNVEYVSVDQIPAEVV
HHHHHHHCCCEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHH
EREKAIEMGKEDLANKPENIREKIVQGRIEKRLKELSLLDQPFIKDSSITVEELVKQHIA
HHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
KLGENIRVRRFVRFVLGEGIEKEEVDFAAEVAAQAGLKPAEAPKVEETPPAPPEEPAPEP
HHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
APAAESKPAKKGSAKKKK
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA