| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is dnaG [H]
Identifier: 86608987
GI number: 86608987
Start: 1596008
End: 1597948
Strand: Direct
Name: dnaG [H]
Synonym: CYB_1520
Alternate gene names: 86608987
Gene position: 1596008-1597948 (Clockwise)
Preceding gene: 86608981
Following gene: 86608989
Centisome position: 52.39
GC content: 58.27
Gene sequence:
>1941_bases ATGAGCGGTCTGCCCCCCGATTTCATTCAGTTGGTGCGCCAAAAGGCCGACCTCGTGGAAGTGGTGGCCGAAAAAGTGGT GCTGCGCAAGCAGGGAAAGAACTTCGTTGGGCTTTGCCCTTTCCACAACGACCACAAACCCAGTTTTCAGGTCAGCCCCA GCAAGCAGATCTACAAGTGCTTCTCCTGCGGGGCAGGGGGAGATGTGCTGCGCTTTGTCATGCAGACCGAGCATCTCTCC TTTGCTGAGGCCGTGCGCCACTTGGCGCGGCGATACCACATACCTCTGCCCACCCGCAATCCCGAGGCGCAGCCCTTGGG ATCCCTTGATGAGCGGGAGCTCTCCCACCGGGAAAAGCTGCTGGAGATTTTGGCCATGGCTGCCGATTTTTATCGGCATG CCCTCCGATCCCAGCTAGGATCCGCCGCCCGCCAGTACCTGCACAGCCGCCACCTGAGCGAAGAAACTTTGCAAAAATTT CAAATCGGCTTTGCTCCCCCCGGCTGGCAATCTCTCTACGAATACTTGGTCAACCACAAGCGCCAACCGGTCAAACTTTT AGAAGAGGCTGGATTGCTGGTTCCCCGCCAGCAGGGATCCGGCCACTACGACCGCTTTCGCAACCGGATCATGCTGCCCA TTTTCGATGTGCAGGGGCGGGTGATCGGGTTTGCCGGCAGAGCCTTGGGGGAGTCAGGACAGCCCAAGTACCTCAACTCT CCAGAAACAGAGCTTTTCAACAAAAGCCAGGTGGTCTATGGCCTCAACTTTGCCCGCGATGCCATTGCCAAAGCCGATCA AGTCCTGGTGGTGGAAGGCTACTTCGATGTCATCGCCCTGCATCAGGCGGGAGTTGCCTATGCTGTAGCGGCCATGGGCA CTGCTTTGACACCCCACCAGGTGAAGACCCTGCTGCGCTACACCCAGTCGAAGCGGCTGATCCTCAATTTTGATGCGGAT CGGGCCGGTTTGAACGCCGCCAGCCGGGCCATTGAAGCCATTGAAGAACAAGCGCGGCGCGGAGAAATTGAGCTGCGCAT TCTCACCCTTCCTGAGGGCAAAGATGCCGACGAGTTTTTGCGGGAGTACAAGAGCTCGGCCCCGCCGACGCGAGCGGTTG CTGAACTGCAAACCCTGATCGAGCAAGCTCCCCTGTGGCTGGATTGGCGAATTGAACAGGTGTTGGCCGGTCGGGATCTG AGCCGGGCCACCGATTTTCAGCAGGCCCGTCAAGCCCTTGTGCAACTGCTGGCCGGTTTGGGTGGACAATGGCGCTCTTT GTATTTGCACAAAGTGGCAGAATTGCTCAGCCGCGGCAACGGTCGCCTCAGTCGAGACTTGGAAGAAGACCTGCGCCGAG CCGTGCGGCAGTACCGCTGGGCCAAACCCCAGCAACCTTCCCTCAATAAGGGATCCAAACTCTTGCAATCTGAGTCCCAT CTTTTGCAGATCTTTCTGCATTTTGGCGAGTATCGCCACGAAATTCGCCAAACTTTGCTGGAGCGGGAGCTGCAATTTAG TTTTCGCCCCCACCGGGAGCTGTGGCAGCGGATCTTGGAACTGATCTCGGCTCAGCCGGAGCTGGAAGAGCAAGAAGAGA CGTTGCTGACGGCTTTGCGCACCCTCTGTGCCCAAGATGAGCAGCTCAACGAGCGCCTCAGCCATCTGCTCTGGTTGGAC GAAAATACCCGCGTAGCCCTGATGCGTCCACGGATGGTGGTGCGGGCCGCCATTGCCAACATGGAGCTGGAAATTCGCCA GAAGCGCTACCGCTACTGGACCCAACTGTGGGATCAAGCCTTTTCCGAAGGCAACACTGCCCTGGCCGCCCAGTACCAGG CCAGCATCCAGCAGGAATACCAAGCGATTCAGGCGCTGCAGCGGCAGGTGCAACTGAGCCTGGAAGACATGTCGGAAACC CCACTGGCCGAAGATTTATAG
Upstream 100 bases:
>100_bases CCTTTAAGGCCCGCCCATTATCCCAAGCCCGTTGGGCCAGGTCAAAAGACGGCCTGTCGAGCTTCCCCCGGCTACCATAA GGTCAGGATCCCCCGAAGCC
Downstream 100 bases:
>100_bases TCATTTCGATTCAAACTAGGACACTAAACCCATAACCCCATACGCGGCCAGAAGGCTTCTCTCTATAGCCCGAGTGTCTC ACCCTAAACTGAACAGCACT
Product: DNA primase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 646; Mature: 645
Protein sequence:
>646_residues MSGLPPDFIQLVRQKADLVEVVAEKVVLRKQGKNFVGLCPFHNDHKPSFQVSPSKQIYKCFSCGAGGDVLRFVMQTEHLS FAEAVRHLARRYHIPLPTRNPEAQPLGSLDERELSHREKLLEILAMAADFYRHALRSQLGSAARQYLHSRHLSEETLQKF QIGFAPPGWQSLYEYLVNHKRQPVKLLEEAGLLVPRQQGSGHYDRFRNRIMLPIFDVQGRVIGFAGRALGESGQPKYLNS PETELFNKSQVVYGLNFARDAIAKADQVLVVEGYFDVIALHQAGVAYAVAAMGTALTPHQVKTLLRYTQSKRLILNFDAD RAGLNAASRAIEAIEEQARRGEIELRILTLPEGKDADEFLREYKSSAPPTRAVAELQTLIEQAPLWLDWRIEQVLAGRDL SRATDFQQARQALVQLLAGLGGQWRSLYLHKVAELLSRGNGRLSRDLEEDLRRAVRQYRWAKPQQPSLNKGSKLLQSESH LLQIFLHFGEYRHEIRQTLLERELQFSFRPHRELWQRILELISAQPELEEQEETLLTALRTLCAQDEQLNERLSHLLWLD ENTRVALMRPRMVVRAAIANMELEIRQKRYRYWTQLWDQAFSEGNTALAAQYQASIQQEYQAIQALQRQVQLSLEDMSET PLAEDL
Sequences:
>Translated_646_residues MSGLPPDFIQLVRQKADLVEVVAEKVVLRKQGKNFVGLCPFHNDHKPSFQVSPSKQIYKCFSCGAGGDVLRFVMQTEHLS FAEAVRHLARRYHIPLPTRNPEAQPLGSLDERELSHREKLLEILAMAADFYRHALRSQLGSAARQYLHSRHLSEETLQKF QIGFAPPGWQSLYEYLVNHKRQPVKLLEEAGLLVPRQQGSGHYDRFRNRIMLPIFDVQGRVIGFAGRALGESGQPKYLNS PETELFNKSQVVYGLNFARDAIAKADQVLVVEGYFDVIALHQAGVAYAVAAMGTALTPHQVKTLLRYTQSKRLILNFDAD RAGLNAASRAIEAIEEQARRGEIELRILTLPEGKDADEFLREYKSSAPPTRAVAELQTLIEQAPLWLDWRIEQVLAGRDL SRATDFQQARQALVQLLAGLGGQWRSLYLHKVAELLSRGNGRLSRDLEEDLRRAVRQYRWAKPQQPSLNKGSKLLQSESH LLQIFLHFGEYRHEIRQTLLERELQFSFRPHRELWQRILELISAQPELEEQEETLLTALRTLCAQDEQLNERLSHLLWLD ENTRVALMRPRMVVRAAIANMELEIRQKRYRYWTQLWDQAFSEGNTALAAQYQASIQQEYQAIQALQRQVQLSLEDMSET PLAEDL >Mature_645_residues SGLPPDFIQLVRQKADLVEVVAEKVVLRKQGKNFVGLCPFHNDHKPSFQVSPSKQIYKCFSCGAGGDVLRFVMQTEHLSF AEAVRHLARRYHIPLPTRNPEAQPLGSLDERELSHREKLLEILAMAADFYRHALRSQLGSAARQYLHSRHLSEETLQKFQ IGFAPPGWQSLYEYLVNHKRQPVKLLEEAGLLVPRQQGSGHYDRFRNRIMLPIFDVQGRVIGFAGRALGESGQPKYLNSP ETELFNKSQVVYGLNFARDAIAKADQVLVVEGYFDVIALHQAGVAYAVAAMGTALTPHQVKTLLRYTQSKRLILNFDADR AGLNAASRAIEAIEEQARRGEIELRILTLPEGKDADEFLREYKSSAPPTRAVAELQTLIEQAPLWLDWRIEQVLAGRDLS RATDFQQARQALVQLLAGLGGQWRSLYLHKVAELLSRGNGRLSRDLEEDLRRAVRQYRWAKPQQPSLNKGSKLLQSESHL LQIFLHFGEYRHEIRQTLLERELQFSFRPHRELWQRILELISAQPELEEQEETLLTALRTLCAQDEQLNERLSHLLWLDE NTRVALMRPRMVVRAAIANMELEIRQKRYRYWTQLWDQAFSEGNTALAAQYQASIQQEYQAIQALQRQVQLSLEDMSETP LAEDL
Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]
COG id: COG0358
COG function: function code L; DNA primase (bacterial type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1789447, Length=368, Percent_Identity=42.3913043478261, Blast_Score=285, Evalue=6e-78,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013264 - InterPro: IPR019475 - InterPro: IPR006295 - InterPro: IPR006171 - InterPro: IPR002694 [H]
Pfam domain/function: PF10410 DnaB_bind; PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]
EC number: 2.7.7.-
Molecular weight: Translated: 74113; Mature: 73982
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGLPPDFIQLVRQKADLVEVVAEKVVLRKQGKNFVGLCPFHNDHKPSFQVSPSKQIYKC CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEECCCHHHHHHH FSCGAGGDVLRFVMQTEHLSFAEAVRHLARRYHIPLPTRNPEAQPLGSLDERELSHREKL HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH LEILAMAADFYRHALRSQLGSAARQYLHSRHLSEETLQKFQIGFAPPGWQSLYEYLVNHK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCC RQPVKLLEEAGLLVPRQQGSGHYDRFRNRIMLPIFDVQGRVIGFAGRALGESGQPKYLNS CCHHHHHHHCCCEEECCCCCCHHHHHHCCEEEEEECCCCCEEEEHHHHCCCCCCCCCCCC PETELFNKSQVVYGLNFARDAIAKADQVLVVEGYFDVIALHQAGVAYAVAAMGTALTPHQ CHHHHHCCCCEEEEHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHH VKTLLRYTQSKRLILNFDADRAGLNAASRAIEAIEEQARRGEIELRILTLPEGKDADEFL HHHHHHHHCCCCEEEEECCCHHCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH REYKSSAPPTRAVAELQTLIEQAPLWLDWRIEQVLAGRDLSRATDFQQARQALVQLLAGL HHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC GGQWRSLYLHKVAELLSRGNGRLSRDLEEDLRRAVRQYRWAKPQQPSLNKGSKLLQSESH CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH LLQIFLHFGEYRHEIRQTLLERELQFSFRPHRELWQRILELISAQPELEEQEETLLTALR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH TLCAQDEQLNERLSHLLWLDENTRVALMRPRMVVRAAIANMELEIRQKRYRYWTQLWDQA HHHCCHHHHHHHHHHHEEECCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH FSEGNTALAAQYQASIQQEYQAIQALQRQVQLSLEDMSETPLAEDL HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SGLPPDFIQLVRQKADLVEVVAEKVVLRKQGKNFVGLCPFHNDHKPSFQVSPSKQIYKC CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEECCCHHHHHHH FSCGAGGDVLRFVMQTEHLSFAEAVRHLARRYHIPLPTRNPEAQPLGSLDERELSHREKL HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH LEILAMAADFYRHALRSQLGSAARQYLHSRHLSEETLQKFQIGFAPPGWQSLYEYLVNHK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCC RQPVKLLEEAGLLVPRQQGSGHYDRFRNRIMLPIFDVQGRVIGFAGRALGESGQPKYLNS CCHHHHHHHCCCEEECCCCCCHHHHHHCCEEEEEECCCCCEEEEHHHHCCCCCCCCCCCC PETELFNKSQVVYGLNFARDAIAKADQVLVVEGYFDVIALHQAGVAYAVAAMGTALTPHQ CHHHHHCCCCEEEEHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHH VKTLLRYTQSKRLILNFDADRAGLNAASRAIEAIEEQARRGEIELRILTLPEGKDADEFL HHHHHHHHCCCCEEEEECCCHHCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH REYKSSAPPTRAVAELQTLIEQAPLWLDWRIEQVLAGRDLSRATDFQQARQALVQLLAGL HHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC GGQWRSLYLHKVAELLSRGNGRLSRDLEEDLRRAVRQYRWAKPQQPSLNKGSKLLQSESH CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH LLQIFLHFGEYRHEIRQTLLERELQFSFRPHRELWQRILELISAQPELEEQEETLLTALR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH TLCAQDEQLNERLSHLLWLDENTRVALMRPRMVVRAAIANMELEIRQKRYRYWTQLWDQA HHHCCHHHHHHHHHHHEEECCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH FSEGNTALAAQYQASIQQEYQAIQALQRQVQLSLEDMSETPLAEDL HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA