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The map label for this gene is radA [H]

Identifier: 86608979

GI number: 86608979

Start: 1584674

End: 1586068

Strand: Direct

Name: radA [H]

Synonym: CYB_1512

Alternate gene names: 86608979

Gene position: 1584674-1586068 (Clockwise)

Preceding gene: 86608978

Following gene: 86608980

Centisome position: 52.01

GC content: 63.15

Gene sequence:

>1395_bases
ATGGCCAAGGCCAAAACCGTCTGGGAGTGCAGCCAGTGCGGCGAGCGCTATGCCAAGTTTTTGGGCCGCTGCGACCATTG
CGGCGCCTGGAACACCCTGACGGAAGTGGTCGTCGCCCCAGCGGCCAAGTCCCCACGGGCCCAAGCCCTCGCTCCTAGGT
CCAACCGCGCCAATGGGATCCCCCGGTCGGCCCTCCCCCTCTCCCAGGTCTCCTCAGATCGCCACCCTCGCCTCTCCTCC
GGCTATGGCGAGTTTGACCGGGTGTTGGGAGGTGGCATTGTGCCGGGATCCCTGGTGTTGATTGGCGGGGATCCGGGCAT
TGGCAAGAGCACCCTGCTGCTGCAGAGCGCTGCCCACCTGGCCAAGAGCGGGCCCATCTTATACGTGTCGGGGGAAGAAT
CAGCCCAGCAGATCAAGCTACGCGCCGAGCGGCTGGGGGTGGAAAGCGAGCAGCTCTACCTCTTGGCCGAGACCGACCTG
GAGGCCATCGTGGCGGAGATCCAGGCTCTGCAACCGCAGGTGGCGGTGATCGACAGCATTCAAGCCATCTTCTGGGGGCA
ACTCACCTCGGCGCCGGGATCCGTTTCCCAGGTGCGGGAATGCACCGGCCTGTTAATGCGGCTGGCCAAAAAACTGGGGG
TGGCTCTGCTGATTGTAGGCCATGTTACCAAAGACGGATCCCTGGCCGGGCCGAAGGTGCTGGAGCATTTGGTGGACACG
GTCTTGTACTTTGAGGGGGATCGCTTCCAAAGCCACCGCCTATTGCGCGCCGTCAAAAACCGCTTTGGGGCAGCCCAGGA
AATGGGTGTTTTTGAGATGACCGCCTCTGGCTTGGTGGAGGTGGAGAACCCCTCGCAGCTTTTTTTGAGTAGCCGGGATC
AGGCCATGCCCGGAACAGCCACCATCGTTGCCTGCGAGGGCACCCGCCCCTTGGTGGTGGAAGTGCAGGCCCTAGTCAGC
CCCACCAGCTACAGTTCCCCCCGCCGCACCTCAACCGGCATTGAAATCAACCGCTTTTTGCAGATCTTGGCCGTGCTGGA
AAAACGGGTGGGGATCCCGCTTTCCAAATACGATGCTTACATCGCCTCTGCCGGCGGCATTCAGGTAGCCGAGCCAGCTG
CCGACTTGGGGGTAGCAGTGGCCGTGGCCGCCAGCTTCCGGGATCGCCAAGTGGATCCTTTTACAGTCCTGATTGGCGAG
GTGGGACTGGGGGGGCAGGTGCGCCCGGTGGCCCAGTTGGAGCAGCGCTTGAAAGAAGCCAGCAAACTGGGGTTTCGCCA
CGCCATCATCCCCAACAGCCCTGTGTTGTCGGATCACGGCCTGCGCCTGAGTCGGGTGCAGCGGGTGTTGGAAGCCCTGC
TGGTGGCTGTGCCCGGTTCCCAGAGCGCAGAGTGA

Upstream 100 bases:

>100_bases
CGACCATCTGCTGCGCCACCACGCCCAGTGCGGATCCCTGGTCTTGTCGGAGGTGCCCCTCCCTGTCGCCGCTGCTCCCC
AGGCCTAGGAGTCCCCGGCT

Downstream 100 bases:

>100_bases
ACATCCCCTTGCCTTCCACCCGTCGCCGGCTGCTGGGCTCTGCTGCGCCTATCTCCAAAGGCCAAGCAAGGACTCCGTCC
CGCTAACGCGATTGGACTCC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MAKAKTVWECSQCGERYAKFLGRCDHCGAWNTLTEVVVAPAAKSPRAQALAPRSNRANGIPRSALPLSQVSSDRHPRLSS
GYGEFDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQSAAHLAKSGPILYVSGEESAQQIKLRAERLGVESEQLYLLAETDL
EAIVAEIQALQPQVAVIDSIQAIFWGQLTSAPGSVSQVRECTGLLMRLAKKLGVALLIVGHVTKDGSLAGPKVLEHLVDT
VLYFEGDRFQSHRLLRAVKNRFGAAQEMGVFEMTASGLVEVENPSQLFLSSRDQAMPGTATIVACEGTRPLVVEVQALVS
PTSYSSPRRTSTGIEINRFLQILAVLEKRVGIPLSKYDAYIASAGGIQVAEPAADLGVAVAVAASFRDRQVDPFTVLIGE
VGLGGQVRPVAQLEQRLKEASKLGFRHAIIPNSPVLSDHGLRLSRVQRVLEALLVAVPGSQSAE

Sequences:

>Translated_464_residues
MAKAKTVWECSQCGERYAKFLGRCDHCGAWNTLTEVVVAPAAKSPRAQALAPRSNRANGIPRSALPLSQVSSDRHPRLSS
GYGEFDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQSAAHLAKSGPILYVSGEESAQQIKLRAERLGVESEQLYLLAETDL
EAIVAEIQALQPQVAVIDSIQAIFWGQLTSAPGSVSQVRECTGLLMRLAKKLGVALLIVGHVTKDGSLAGPKVLEHLVDT
VLYFEGDRFQSHRLLRAVKNRFGAAQEMGVFEMTASGLVEVENPSQLFLSSRDQAMPGTATIVACEGTRPLVVEVQALVS
PTSYSSPRRTSTGIEINRFLQILAVLEKRVGIPLSKYDAYIASAGGIQVAEPAADLGVAVAVAASFRDRQVDPFTVLIGE
VGLGGQVRPVAQLEQRLKEASKLGFRHAIIPNSPVLSDHGLRLSRVQRVLEALLVAVPGSQSAE
>Mature_463_residues
AKAKTVWECSQCGERYAKFLGRCDHCGAWNTLTEVVVAPAAKSPRAQALAPRSNRANGIPRSALPLSQVSSDRHPRLSSG
YGEFDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQSAAHLAKSGPILYVSGEESAQQIKLRAERLGVESEQLYLLAETDLE
AIVAEIQALQPQVAVIDSIQAIFWGQLTSAPGSVSQVRECTGLLMRLAKKLGVALLIVGHVTKDGSLAGPKVLEHLVDTV
LYFEGDRFQSHRLLRAVKNRFGAAQEMGVFEMTASGLVEVENPSQLFLSSRDQAMPGTATIVACEGTRPLVVEVQALVSP
TSYSSPRRTSTGIEINRFLQILAVLEKRVGIPLSKYDAYIASAGGIQVAEPAADLGVAVAVAASFRDRQVDPFTVLIGEV
GLGGQVRPVAQLEQRLKEASKLGFRHAIIPNSPVLSDHGLRLSRVQRVLEALLVAVPGSQSAE

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=463, Percent_Identity=47.3002159827214, Blast_Score=416, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 49412; Mature: 49281

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAKTVWECSQCGERYAKFLGRCDHCGAWNTLTEVVVAPAAKSPRAQALAPRSNRANGI
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCC
PRSALPLSQVSSDRHPRLSSGYGEFDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQSAAHL
CCCCCCHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHH
AKSGPILYVSGEESAQQIKLRAERLGVESEQLYLLAETDLEAIVAEIQALQPQVAVIDSI
HCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHH
QAIFWGQLTSAPGSVSQVRECTGLLMRLAKKLGVALLIVGHVTKDGSLAGPKVLEHLVDT
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHH
VLYFEGDRFQSHRLLRAVKNRFGAAQEMGVFEMTASGLVEVENPSQLFLSSRDQAMPGTA
HHHCCCCCHHHHHHHHHHHHHHCCHHHCCHHEECCCCEEEECCCHHHHHCCCCCCCCCCE
TIVACEGTRPLVVEVQALVSPTSYSSPRRTSTGIEINRFLQILAVLEKRVGIPLSKYDAY
EEEEECCCCCEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
IASAGGIQVAEPAADLGVAVAVAASFRDRQVDPFTVLIGEVGLGGQVRPVAQLEQRLKEA
HCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
SKLGFRHAIIPNSPVLSDHGLRLSRVQRVLEALLVAVPGSQSAE
HHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AKAKTVWECSQCGERYAKFLGRCDHCGAWNTLTEVVVAPAAKSPRAQALAPRSNRANGI
CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCC
PRSALPLSQVSSDRHPRLSSGYGEFDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQSAAHL
CCCCCCHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHH
AKSGPILYVSGEESAQQIKLRAERLGVESEQLYLLAETDLEAIVAEIQALQPQVAVIDSI
HCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHH
QAIFWGQLTSAPGSVSQVRECTGLLMRLAKKLGVALLIVGHVTKDGSLAGPKVLEHLVDT
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHH
VLYFEGDRFQSHRLLRAVKNRFGAAQEMGVFEMTASGLVEVENPSQLFLSSRDQAMPGTA
HHHCCCCCHHHHHHHHHHHHHHCCHHHCCHHEECCCCEEEECCCHHHHHCCCCCCCCCCE
TIVACEGTRPLVVEVQALVSPTSYSSPRRTSTGIEINRFLQILAVLEKRVGIPLSKYDAY
EEEEECCCCCEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
IASAGGIQVAEPAADLGVAVAVAASFRDRQVDPFTVLIGEVGLGGQVRPVAQLEQRLKEA
HCCCCCCEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
SKLGFRHAIIPNSPVLSDHGLRLSRVQRVLEALLVAVPGSQSAE
HHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]