| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608953
Identifier: 86608953
GI number: 86608953
Start: 1562119
End: 1562664
Strand: Direct
Name: 86608953
Synonym: CYB_1486
Alternate gene names: NA
Gene position: 1562119-1562664 (Clockwise)
Preceding gene: 86608952
Following gene: 86608954
Centisome position: 51.27
GC content: 49.82
Gene sequence:
>546_bases ATGGGAAATATCTTGCGAATTGTTGTAACAGGGCCGGTGGGAGCTGGAAAGTCTACCTTTATTCGCACGATTAGCGAGAT TGAGGTAGTAGACACCGATTGCAAAGCAACGGACGAGGTGGCAGAGCTGAAGAAAACCACGACGGTAAGCATGGACTTCG GCCGCTTGAGAATTGGAGAGGATGAAGAAGAGATGTGGCTGCATCTCTACGGTACTCCCGGCCAGTCTCGCTTTAACTTT ATGTGGGATATTTTAATTAAGCGCGCCCACGGCTATGTTCTTCTGGTGCCCGCGCACCTGCCGGGTCAATTTCGCAATGC CCAAGCCATTCAATCTTTTATGAAGGTGAGAACAAGTGCCCCCTGCGTGATTGGGATCACCCACGTCGATCAACCCAATG CCTGGGATCCAGAAGACATTTTGTTAATTTTGGGGAATCAAGATGGCGCGATTCCCCACACCACTTTGAATGCTCAAGAG CCATCTTCTGTTGCCAACACGTTGCTTCTGTTGGTTGAGCAAATGATGCCCCAGGTGGTTGTTTGA
Upstream 100 bases:
>100_bases GAAGCAACCTGGAGATAGCTTTACCTCCCGTGCGGCACATCGGTGCACTCCCCCGAGTTTTATTCAGCTTTGTCGCTAGA GCTTAGTCTGAGGCCAGTTT
Downstream 100 bases:
>100_bases ACAGATTTTCAGGTATCCAGCAGGCTACAGCTTTTTTTAGCAACATCGACCCCAGCCAACACAGGCGTATCTTTTGCGTG ACAGGGATCCCTCCCGTGAA
Product: small GTP-binding protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MGNILRIVVTGPVGAGKSTFIRTISEIEVVDTDCKATDEVAELKKTTTVSMDFGRLRIGEDEEEMWLHLYGTPGQSRFNF MWDILIKRAHGYVLLVPAHLPGQFRNAQAIQSFMKVRTSAPCVIGITHVDQPNAWDPEDILLILGNQDGAIPHTTLNAQE PSSVANTLLLLVEQMMPQVVV
Sequences:
>Translated_181_residues MGNILRIVVTGPVGAGKSTFIRTISEIEVVDTDCKATDEVAELKKTTTVSMDFGRLRIGEDEEEMWLHLYGTPGQSRFNF MWDILIKRAHGYVLLVPAHLPGQFRNAQAIQSFMKVRTSAPCVIGITHVDQPNAWDPEDILLILGNQDGAIPHTTLNAQE PSSVANTLLLLVEQMMPQVVV >Mature_180_residues GNILRIVVTGPVGAGKSTFIRTISEIEVVDTDCKATDEVAELKKTTTVSMDFGRLRIGEDEEEMWLHLYGTPGQSRFNFM WDILIKRAHGYVLLVPAHLPGQFRNAQAIQSFMKVRTSAPCVIGITHVDQPNAWDPEDILLILGNQDGAIPHTTLNAQEP SSVANTLLLLVEQMMPQVVV
Specific function: Unknown
COG id: COG2229
COG function: function code R; Predicted GTPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20009; Mature: 19878
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNILRIVVTGPVGAGKSTFIRTISEIEVVDTDCKATDEVAELKKTTTVSMDFGRLRIGE CCCEEEEEEECCCCCCHHHHHHHHHHEEEEECCCCCHHHHHHHHHHEEEEECCCEEECCC DEEEMWLHLYGTPGQSRFNFMWDILIKRAHGYVLLVPAHLPGQFRNAQAIQSFMKVRTSA CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC PCVIGITHVDQPNAWDPEDILLILGNQDGAIPHTTLNAQEPSSVANTLLLLVEQMMPQVV CEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHC V C >Mature Secondary Structure GNILRIVVTGPVGAGKSTFIRTISEIEVVDTDCKATDEVAELKKTTTVSMDFGRLRIGE CCEEEEEEECCCCCCHHHHHHHHHHEEEEECCCCCHHHHHHHHHHEEEEECCCEEECCC DEEEMWLHLYGTPGQSRFNFMWDILIKRAHGYVLLVPAHLPGQFRNAQAIQSFMKVRTSA CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC PCVIGITHVDQPNAWDPEDILLILGNQDGAIPHTTLNAQEPSSVANTLLLLVEQMMPQVV CEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHC V C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA