| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608952
Identifier: 86608952
GI number: 86608952
Start: 1561335
End: 1561886
Strand: Direct
Name: 86608952
Synonym: CYB_1485
Alternate gene names: NA
Gene position: 1561335-1561886 (Clockwise)
Preceding gene: 86608951
Following gene: 86608953
Centisome position: 51.25
GC content: 52.72
Gene sequence:
>552_bases ATGGCCATTAAACCTTCTGAGCTGCTCCAAGTCCTGATCTCACGCACGCAATTCACAGATGATGACAAGAAAGTTTTGCA GCAAAGTGCTGACTGGGGCGGCAGTATCGCGGCGGAAATGTCAGACGCCTTTTACGGCTATCTGGATCGCGATGCCGAAA TGGCGGCAGTGATAGCCAAGCACAACCGGCAGCGGCTGGGCCAAACCTTTGCCGACTGGTTCAAGGAAATGTTTACGGGC ATGGATAACTGGGGGCCACAATACGCTGAGCGGCGCTGGAAGATTGGCATAGTTCATGTGCGCGTTGGGATCGGCCCTCA ACATGTTGTGCCTGCTATGGCCACAGTTGTGCAGGAGGTCAGTCGGCGGTTGGTGAAAGAAGGCAAGCCTGAGCAGTTGC GCACCAGCTTGAGCAAGGTCTGTATGATTGACCTCTCCTTTATTGAGCAAGCCTACCTTGAGGTGGCCTATAACGCCGTG CAACAGGAAACAGGCATGAGCGAGGCTTTATTCAAACGGTTAATTGCCAATGGTGCCAACAGTTTAATTTGA
Upstream 100 bases:
>100_bases GGAAATTAAGCGAGTCGCGGCAAGCATTGCAGAGGCAATGAAGTAAGAAAATCAAATGTGGAGGCTAAGTTTTTGATTCT GTCCTGACGTTGAGGGAAGT
Downstream 100 bases:
>100_bases GTTGTTTGAGTTAGAGTGGGCTCTTGCTTACTCTACTTGCTTAATTTCTCTACCTTCTTGGGCTGAGGTGCTTGAGTTTC TGGGATCCCTCTGGAGCAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 183; Mature: 182
Protein sequence:
>183_residues MAIKPSELLQVLISRTQFTDDDKKVLQQSADWGGSIAAEMSDAFYGYLDRDAEMAAVIAKHNRQRLGQTFADWFKEMFTG MDNWGPQYAERRWKIGIVHVRVGIGPQHVVPAMATVVQEVSRRLVKEGKPEQLRTSLSKVCMIDLSFIEQAYLEVAYNAV QQETGMSEALFKRLIANGANSLI
Sequences:
>Translated_183_residues MAIKPSELLQVLISRTQFTDDDKKVLQQSADWGGSIAAEMSDAFYGYLDRDAEMAAVIAKHNRQRLGQTFADWFKEMFTG MDNWGPQYAERRWKIGIVHVRVGIGPQHVVPAMATVVQEVSRRLVKEGKPEQLRTSLSKVCMIDLSFIEQAYLEVAYNAV QQETGMSEALFKRLIANGANSLI >Mature_182_residues AIKPSELLQVLISRTQFTDDDKKVLQQSADWGGSIAAEMSDAFYGYLDRDAEMAAVIAKHNRQRLGQTFADWFKEMFTGM DNWGPQYAERRWKIGIVHVRVGIGPQHVVPAMATVVQEVSRRLVKEGKPEQLRTSLSKVCMIDLSFIEQAYLEVAYNAVQ QETGMSEALFKRLIANGANSLI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20612; Mature: 20481
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIKPSELLQVLISRTQFTDDDKKVLQQSADWGGSIAAEMSDAFYGYLDRDAEMAAVIAK CCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH HNRQRLGQTFADWFKEMFTGMDNWGPQYAERRWKIGIVHVRVGIGPQHVVPAMATVVQEV HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHH SRRLVKEGKPEQLRTSLSKVCMIDLSFIEQAYLEVAYNAVQQETGMSEALFKRLIANGAN HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC SLI CCC >Mature Secondary Structure AIKPSELLQVLISRTQFTDDDKKVLQQSADWGGSIAAEMSDAFYGYLDRDAEMAAVIAK CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH HNRQRLGQTFADWFKEMFTGMDNWGPQYAERRWKIGIVHVRVGIGPQHVVPAMATVVQEV HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHH SRRLVKEGKPEQLRTSLSKVCMIDLSFIEQAYLEVAYNAVQQETGMSEALFKRLIANGAN HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC SLI CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA