| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608925
Identifier: 86608925
GI number: 86608925
Start: 1533681
End: 1534388
Strand: Reverse
Name: 86608925
Synonym: CYB_1457
Alternate gene names: NA
Gene position: 1534388-1533681 (Counterclockwise)
Preceding gene: 86608938
Following gene: 86608924
Centisome position: 50.36
GC content: 63.28
Gene sequence:
>708_bases ATGGCTTCCGATGCTCCTGTTGCCCTTCTCTCCGAGCTCAAGGCGGTGCCAATGTTGGCCGAACTTTCGGCGACGTCCTT GCAATGGTTGGGATCCCAGGTCAAGCTGCGGGATATCCCGGCGGGACAGGCCCTCTTCATGCAAGATGCCTGGGGCAGCG TAGTTTATCTGATCCTCGCCGGCTGGGCTAAGGTGCGGCGGGCTTTGCGGGCGCAAGACAGCACCAAAACCCTTGCCTTG CTGGGGCCGGGCGCTTGGGTGGGGGAAATGGCGGTACTGGACGAAGCTCCCCGCTCGCGAGATGTGCTGGCCCTAACCCC GCTGCGGGTGGCCGGGATCCCGGCGGCAACCTTCAAAGCACTGATGCTGCAGGAGCCGCAACTGTGTTACCAGCTGGCCT GCAGCCTCTCCCGTCGCCTGCGCCTGGCCAACTTGCAGGCGGATCTTGACCAGCAGAGCCCCCCGCTGCGAGTGGTGCAT ACGCTGGTGCAACTGGCGGAAGCTTTTGGCGAGAAGACCCCCCAGGGGATGCGCATTGTCTACCCTCCCCCCCAGGATTT GGCCGATATCAGCCAAGTTAGCCGGGAGACAGCCCTGGCGGTACTGAGCCGTCTGCAGCAGCAGGGGGTTATTCAGCCGC TGCCGGAGCAACAGTCTTTGCTGCTGATCCAGTACGCCAAACTGCTGGAGGCCACCCGTCTGCTTTAG
Upstream 100 bases:
>100_bases GATCTTGGCGCACATGGCGGGGTGGTGGATTGCAGGATAGCTCTTGAGTTGGTAACTGGGCTACAGTGGGCTTGCGGTAT GGTGAAACGTCCGACCCGCC
Downstream 100 bases:
>100_bases ATATTGAAGATATTGACCCATGTCTCCCCAACCGATTTCTCCCCATCCAGGACAAGAATCTGTCTGGGACTATCCGCGCC CACCTCGTCTGGAGCCCACC
Product: cyclic nucleotide-binding protein
Products: NA
Alternate protein names: Transcriptional Regulator Crp/Fnr Family; Transcriptional Regulator; Crp/FNR Family Transcriptional Regulator; Crp Family Transcriptional Regulator; Regulatory Protein; Transcriptional Regulatory Protein; Catabolite Gene Activator Protein; CAMP Receptor Protein; Transcriptional Regulator Crp/Fnr Family Protein
Number of amino acids: Translated: 235; Mature: 234
Protein sequence:
>235_residues MASDAPVALLSELKAVPMLAELSATSLQWLGSQVKLRDIPAGQALFMQDAWGSVVYLILAGWAKVRRALRAQDSTKTLAL LGPGAWVGEMAVLDEAPRSRDVLALTPLRVAGIPAATFKALMLQEPQLCYQLACSLSRRLRLANLQADLDQQSPPLRVVH TLVQLAEAFGEKTPQGMRIVYPPPQDLADISQVSRETALAVLSRLQQQGVIQPLPEQQSLLLIQYAKLLEATRLL
Sequences:
>Translated_235_residues MASDAPVALLSELKAVPMLAELSATSLQWLGSQVKLRDIPAGQALFMQDAWGSVVYLILAGWAKVRRALRAQDSTKTLAL LGPGAWVGEMAVLDEAPRSRDVLALTPLRVAGIPAATFKALMLQEPQLCYQLACSLSRRLRLANLQADLDQQSPPLRVVH TLVQLAEAFGEKTPQGMRIVYPPPQDLADISQVSRETALAVLSRLQQQGVIQPLPEQQSLLLIQYAKLLEATRLL >Mature_234_residues ASDAPVALLSELKAVPMLAELSATSLQWLGSQVKLRDIPAGQALFMQDAWGSVVYLILAGWAKVRRALRAQDSTKTLALL GPGAWVGEMAVLDEAPRSRDVLALTPLRVAGIPAATFKALMLQEPQLCYQLACSLSRRLRLANLQADLDQQSPPLRVVHT LVQLAEAFGEKTPQGMRIVYPPPQDLADISQVSRETALAVLSRLQQQGVIQPLPEQQSLLLIQYAKLLEATRLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25618; Mature: 25487
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: PS50042 CNMP_BINDING_3 ; PS51063 HTH_CRP_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASDAPVALLSELKAVPMLAELSATSLQWLGSQVKLRDIPAGQALFMQDAWGSVVYLILA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEHHHHHHHHHHHHHH GWAKVRRALRAQDSTKTLALLGPGAWVGEMAVLDEAPRSRDVLALTPLRVAGIPAATFKA HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEECCHHHHCCCHHHHHH LMLQEPQLCYQLACSLSRRLRLANLQADLDQQSPPLRVVHTLVQLAEAFGEKTPQGMRIV HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE YPPPQDLADISQVSRETALAVLSRLQQQGVIQPLPEQQSLLLIQYAKLLEATRLL CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ASDAPVALLSELKAVPMLAELSATSLQWLGSQVKLRDIPAGQALFMQDAWGSVVYLILA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEHHHHHHHHHHHHHH GWAKVRRALRAQDSTKTLALLGPGAWVGEMAVLDEAPRSRDVLALTPLRVAGIPAATFKA HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEECCHHHHCCCHHHHHH LMLQEPQLCYQLACSLSRRLRLANLQADLDQQSPPLRVVHTLVQLAEAFGEKTPQGMRIV HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE YPPPQDLADISQVSRETALAVLSRLQQQGVIQPLPEQQSLLLIQYAKLLEATRLL CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA