| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is bcp [H]
Identifier: 86608850
GI number: 86608850
Start: 1446805
End: 1447272
Strand: Reverse
Name: bcp [H]
Synonym: CYB_1376
Alternate gene names: 86608850
Gene position: 1447272-1446805 (Counterclockwise)
Preceding gene: 86608851
Following gene: 86608848
Centisome position: 47.5
GC content: 59.62
Gene sequence:
>468_bases ATGGGGATTGTGATTGGGGCTGTTGCTCCTGACTTTAGCTTGCCTGCGGTGGGGAAAGGGATCCAAAAGGGAGCCCAGAT TTCACTGGCGGCCTACCGGGGCAAGAGCAAGGTGTTGCTGGCCTTTTACCCGGCGGATTTTTCCCCGGTATGCACGAGCG AGATGCGTTGCTTTCGGGAGGATTGGGAAGCTTTCCGGGCCGCGGGCTGCGAGATCTTGGGGATCAGCAGCGATCCCCTC TCCAGGCACCAAGCCTTTGCCGAGCAGCTTAAGCTGGAGTTTCCTTTGCTGAGCGATGTGGACAGAACCGTGAGCCAGCA GTACGGGGTGGACAGCCTGCTGGGGACGCGGCGGGCCTATTTTTTGGTGGATAGCCAAGGGATCCTACGCTACCAGCATG TGGAGTGGCTGCCCTTGTTCAAGCGAGACAACCGGGAGCTGCTGGAGGCCGTGAGGGCGATTAGCTAG
Upstream 100 bases:
>100_bases ACCCCGTCAAGATATCCAACCCAAAATTTTTTGAAGCCAGAAGGGATCCGGATCCACCGTTAGACTGTTGAAGTGAGCTC AGATTGGGTTAGACGGGTCT
Downstream 100 bases:
>100_bases CTCGCCGGGAAGCCCCGCACTCTCTGCAACAGCAGGAGGGTCGGGATGAAAGGCGGATATATTCTGTACTATAATCAACA TGGTTGTACAAAACGGCGTT
Product: anti-oxidant AhpCTSA family protein
Products: NA
Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]
Number of amino acids: Translated: 155; Mature: 154
Protein sequence:
>155_residues MGIVIGAVAPDFSLPAVGKGIQKGAQISLAAYRGKSKVLLAFYPADFSPVCTSEMRCFREDWEAFRAAGCEILGISSDPL SRHQAFAEQLKLEFPLLSDVDRTVSQQYGVDSLLGTRRAYFLVDSQGILRYQHVEWLPLFKRDNRELLEAVRAIS
Sequences:
>Translated_155_residues MGIVIGAVAPDFSLPAVGKGIQKGAQISLAAYRGKSKVLLAFYPADFSPVCTSEMRCFREDWEAFRAAGCEILGISSDPL SRHQAFAEQLKLEFPLLSDVDRTVSQQYGVDSLLGTRRAYFLVDSQGILRYQHVEWLPLFKRDNRELLEAVRAIS >Mature_154_residues GIVIGAVAPDFSLPAVGKGIQKGAQISLAAYRGKSKVLLAFYPADFSPVCTSEMRCFREDWEAFRAAGCEILGISSDPLS RHQAFAEQLKLEFPLLSDVDRTVSQQYGVDSLLGTRRAYFLVDSQGILRYQHVEWLPLFKRDNRELLEAVRAIS
Specific function: Unknown
COG id: COG0450
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI32189392, Length=160, Percent_Identity=38.75, Blast_Score=90, Evalue=6e-19, Organism=Homo sapiens, GI4505591, Length=159, Percent_Identity=37.1069182389937, Blast_Score=80, Evalue=9e-16, Organism=Homo sapiens, GI32455266, Length=159, Percent_Identity=37.1069182389937, Blast_Score=80, Evalue=9e-16, Organism=Homo sapiens, GI32455264, Length=159, Percent_Identity=37.1069182389937, Blast_Score=80, Evalue=9e-16, Organism=Homo sapiens, GI32483377, Length=155, Percent_Identity=32.9032258064516, Blast_Score=68, Evalue=3e-12, Organism=Homo sapiens, GI5453549, Length=137, Percent_Identity=34.3065693430657, Blast_Score=68, Evalue=4e-12, Organism=Homo sapiens, GI5802974, Length=155, Percent_Identity=32.9032258064516, Blast_Score=67, Evalue=4e-12, Organism=Homo sapiens, GI33188454, Length=85, Percent_Identity=45.8823529411765, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1788825, Length=134, Percent_Identity=35.8208955223881, Blast_Score=86, Evalue=1e-18, Organism=Caenorhabditis elegans, GI32565831, Length=159, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193204376, Length=159, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=5e-13, Organism=Drosophila melanogaster, GI21357347, Length=136, Percent_Identity=37.5, Blast_Score=78, Evalue=2e-15, Organism=Drosophila melanogaster, GI17738015, Length=155, Percent_Identity=34.8387096774194, Blast_Score=74, Evalue=3e-14, Organism=Drosophila melanogaster, GI17157991, Length=154, Percent_Identity=36.3636363636364, Blast_Score=74, Evalue=4e-14, Organism=Drosophila melanogaster, GI24641739, Length=154, Percent_Identity=36.3636363636364, Blast_Score=74, Evalue=4e-14, Organism=Drosophila melanogaster, GI24656348, Length=160, Percent_Identity=33.125, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI17864676, Length=160, Percent_Identity=33.125, Blast_Score=72, Evalue=2e-13,
Paralogues:
None
Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 17270; Mature: 17139
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIVIGAVAPDFSLPAVGKGIQKGAQISLAAYRGKSKVLLAFYPADFSPVCTSEMRCFRE CCEEEEECCCCCCCCCCCHHHHCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHH DWEAFRAAGCEILGISSDPLSRHQAFAEQLKLEFPLLSDVDRTVSQQYGVDSLLGTRRAY HHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHCCEEE FLVDSQGILRYQHVEWLPLFKRDNRELLEAVRAIS EEECCCCCEEEECCCEEECCCCCCHHHHHHHHHCC >Mature Secondary Structure GIVIGAVAPDFSLPAVGKGIQKGAQISLAAYRGKSKVLLAFYPADFSPVCTSEMRCFRE CEEEEECCCCCCCCCCCHHHHCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHH DWEAFRAAGCEILGISSDPLSRHQAFAEQLKLEFPLLSDVDRTVSQQYGVDSLLGTRRAY HHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHCCEEE FLVDSQGILRYQHVEWLPLFKRDNRELLEAVRAIS EEECCCCCEEEECCCEEECCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12704232 [H]