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The map label for this gene is clpX [H]

Identifier: 86608810

GI number: 86608810

Start: 1400328

End: 1401674

Strand: Direct

Name: clpX [H]

Synonym: CYB_1336

Alternate gene names: 86608810

Gene position: 1400328-1401674 (Clockwise)

Preceding gene: 86608809

Following gene: 86608811

Centisome position: 45.96

GC content: 57.16

Gene sequence:

>1347_bases
ATGGCCAAATATGACTCCCATCTAAAGTGCTCCTTCTGCAACAAGTCACAGGATCAGGTGCGTAAGTTGATTGCGGGGCC
GGGGGTCTACATCTGTGACGAGTGCGTGGAGCTCTGCAACGAGATTTTGGATGAGGAACTCTACGACGGCAACACTCCTC
CTGCTGCCGCCCCTGCCGGCGGCCGTCGCGAAACCCCCAAAAAACCCTCCCGCAGCCTGCCTTCTTTGGCGCAGTTGCCC
AAGCCGCAGGAGATCATGCGCTATCTCGACCAATATGTGATTGGCCAAGAAAAAGCTAAGAAGGTTTTGTCGGTGGCGGT
TTACAACCACTACAAGCGTCTGGCTGCCAAGGCCAACCCCGGTAGCGTCGGAGTTTCGGAACTGGATGAGGTGGAGCTAC
AGAAGTCCAACATTTTGATCATTGGCCCCACTGGCTCCGGCAAAACCCTGCTGGCGGAAACCCTGGCTCGCATGTTGGAT
GTGCCTTTTGCGGTTGCAGATGCTACCACCCTTACGGAAGCTGGCTATGTGGGCGAGGATGTGGAAAACATCCTTTTGCG
CCTGCTGCAGGTGGCGGACATGGACGTAGAAGAGGCCCAGCGCGGCATCATCTACATCGACGAAATCGACAAAATTGCCC
GCAAAAGCGAGAACCCCTCCATTACCCGCGATGTCTCCGGCGAGGGGGTGCAGCAGGCTTTGTTGAAGATGCTGGAAGGG
ACAATAGCCAACGTGCCTCCCCAGGGAGGGCGCAAGCACCCCTATCAAGACTGCATTCAAATCGACACTTCCAACATCCT
CTTCATTTGCGGGGGGGCTTTTGTTGGCCTGGAAAAAGTAATCGAGCAGCGCATTGGCAAGAAATCGATGGGCTTTATCA
AGCCAGGGGAGCAATTGTCGGTTAGCCGCGAGCAACGTATGGCCAATGCCCTCAAGGCTTTGGAGCCTGAAGACTTGATC
AAGTACGGCATGATTCCCGAATTCACGGGGCGGCTCCCGGTAGTGGCGACTTTGGATCCGCTGGATGAGAAGGCGCTGGA
GGCGATCCTGACGCAGCCCAAAAACGCCATTCTCAAGCAGGCGCAGAAGCTGTTGCGCATGGACGGGGTGGAACTGGAGT
TTGAACCTGCCGCCATTGCTGCCATTGCCAAAGAGGCTTATCGCCGCAAGACCGGGGCTCGCGCCCTGCGGGCCATTGTG
GAAGAGCTAATGCTGGATGTGATGTACGAGGCACCCTCCCGCCGCGACCTGAAATACATCCGCATCACCGCAGAGATGGT
GGAGCGCCGTTCCACCCGCGAGCTGATTCCTCACCCCTCTACGCTGCCCAAGCCTGAGTCGGCCTAG

Upstream 100 bases:

>100_bases
TACGCTTTCGCAGCCAATTTGCGACTGGATTGGAAGGTTTAGTTTTCTTCTGGCTTTTGCCGGATTAGGATAGCCAAGAG
CAAGCAGCAACGAGGATCCC

Downstream 100 bases:

>100_bases
AGTCGCGGCCCTTCCGATCCCTGCTGGATGAACTTATGATCTGTTCTTGAAAGAGGGGGCAGGAGATCCTATGGCAGGGA
CTGCGTTCCGCCGGCGCGAA

Product: ATP-dependent protease ATP-binding subunit ClpX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MAKYDSHLKCSFCNKSQDQVRKLIAGPGVYICDECVELCNEILDEELYDGNTPPAAAPAGGRRETPKKPSRSLPSLAQLP
KPQEIMRYLDQYVIGQEKAKKVLSVAVYNHYKRLAAKANPGSVGVSELDEVELQKSNILIIGPTGSGKTLLAETLARMLD
VPFAVADATTLTEAGYVGEDVENILLRLLQVADMDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEG
TIANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKVIEQRIGKKSMGFIKPGEQLSVSREQRMANALKALEPEDLI
KYGMIPEFTGRLPVVATLDPLDEKALEAILTQPKNAILKQAQKLLRMDGVELEFEPAAIAAIAKEAYRRKTGARALRAIV
EELMLDVMYEAPSRRDLKYIRITAEMVERRSTRELIPHPSTLPKPESA

Sequences:

>Translated_448_residues
MAKYDSHLKCSFCNKSQDQVRKLIAGPGVYICDECVELCNEILDEELYDGNTPPAAAPAGGRRETPKKPSRSLPSLAQLP
KPQEIMRYLDQYVIGQEKAKKVLSVAVYNHYKRLAAKANPGSVGVSELDEVELQKSNILIIGPTGSGKTLLAETLARMLD
VPFAVADATTLTEAGYVGEDVENILLRLLQVADMDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEG
TIANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKVIEQRIGKKSMGFIKPGEQLSVSREQRMANALKALEPEDLI
KYGMIPEFTGRLPVVATLDPLDEKALEAILTQPKNAILKQAQKLLRMDGVELEFEPAAIAAIAKEAYRRKTGARALRAIV
EELMLDVMYEAPSRRDLKYIRITAEMVERRSTRELIPHPSTLPKPESA
>Mature_447_residues
AKYDSHLKCSFCNKSQDQVRKLIAGPGVYICDECVELCNEILDEELYDGNTPPAAAPAGGRRETPKKPSRSLPSLAQLPK
PQEIMRYLDQYVIGQEKAKKVLSVAVYNHYKRLAAKANPGSVGVSELDEVELQKSNILIIGPTGSGKTLLAETLARMLDV
PFAVADATTLTEAGYVGEDVENILLRLLQVADMDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGT
IANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKVIEQRIGKKSMGFIKPGEQLSVSREQRMANALKALEPEDLIK
YGMIPEFTGRLPVVATLDPLDEKALEAILTQPKNAILKQAQKLLRMDGVELEFEPAAIAAIAKEAYRRKTGARALRAIVE
ELMLDVMYEAPSRRDLKYIRITAEMVERRSTRELIPHPSTLPKPESA

Specific function: ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP [H]

COG id: COG1219

COG function: function code O; ATP-dependent protease Clp, ATPase subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpX chaperone family [H]

Homologues:

Organism=Homo sapiens, GI7242140, Length=395, Percent_Identity=44.8101265822785, Blast_Score=301, Evalue=1e-81,
Organism=Escherichia coli, GI1786642, Length=431, Percent_Identity=60.5568445475638, Blast_Score=490, Evalue=1e-140,
Organism=Escherichia coli, GI1790366, Length=217, Percent_Identity=32.7188940092166, Blast_Score=91, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71988663, Length=409, Percent_Identity=40.3422982885086, Blast_Score=263, Evalue=2e-70,
Organism=Caenorhabditis elegans, GI71982908, Length=305, Percent_Identity=42.6229508196721, Blast_Score=262, Evalue=3e-70,
Organism=Caenorhabditis elegans, GI71982905, Length=305, Percent_Identity=42.6229508196721, Blast_Score=261, Evalue=5e-70,
Organism=Caenorhabditis elegans, GI71988660, Length=251, Percent_Identity=41.0358565737052, Blast_Score=174, Evalue=1e-43,
Organism=Saccharomyces cerevisiae, GI6319704, Length=430, Percent_Identity=38.6046511627907, Blast_Score=269, Evalue=8e-73,
Organism=Drosophila melanogaster, GI24648289, Length=319, Percent_Identity=45.7680250783699, Blast_Score=284, Evalue=1e-76,
Organism=Drosophila melanogaster, GI24648291, Length=319, Percent_Identity=45.7680250783699, Blast_Score=284, Evalue=1e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR019489
- InterPro:   IPR004487
- InterPro:   IPR010603 [H]

Pfam domain/function: PF07724 AAA_2; PF10431 ClpB_D2-small; PF06689 zf-C4_ClpX [H]

EC number: NA

Molecular weight: Translated: 49435; Mature: 49304

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKYDSHLKCSFCNKSQDQVRKLIAGPGVYICDECVELCNEILDEELYDGNTPPAAAPAG
CCCCCCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GRRETPKKPSRSLPSLAQLPKPQEIMRYLDQYVIGQEKAKKVLSVAVYNHYKRLAAKANP
CCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCC
GSVGVSELDEVELQKSNILIIGPTGSGKTLLAETLARMLDVPFAVADATTLTEAGYVGED
CCCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHCHHHHHHCCCCCHH
VENILLRLLQVADMDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEG
HHHHHHHHHHHHCCCHHHHHCCEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
TIANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKVIEQRIGKKSMGFIKPGEQLS
HHHCCCCCCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
VSREQRMANALKALEPEDLIKYGMIPEFTGRLPVVATLDPLDEKALEAILTQPKNAILKQ
HHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHH
AQKLLRMDGVELEFEPAAIAAIAKEAYRRKTGARALRAIVEELMLDVMYEAPSRRDLKYI
HHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHE
RITAEMVERRSTRELIPHPSTLPKPESA
EEEHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AKYDSHLKCSFCNKSQDQVRKLIAGPGVYICDECVELCNEILDEELYDGNTPPAAAPAG
CCCCCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GRRETPKKPSRSLPSLAQLPKPQEIMRYLDQYVIGQEKAKKVLSVAVYNHYKRLAAKANP
CCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCC
GSVGVSELDEVELQKSNILIIGPTGSGKTLLAETLARMLDVPFAVADATTLTEAGYVGED
CCCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHCHHHHHHCCCCCHH
VENILLRLLQVADMDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEG
HHHHHHHHHHHHCCCHHHHHCCEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
TIANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKVIEQRIGKKSMGFIKPGEQLS
HHHCCCCCCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
VSREQRMANALKALEPEDLIKYGMIPEFTGRLPVVATLDPLDEKALEAILTQPKNAILKQ
HHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHH
AQKLLRMDGVELEFEPAAIAAIAKEAYRRKTGARALRAIVEELMLDVMYEAPSRRDLKYI
HHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHE
RITAEMVERRSTRELIPHPSTLPKPESA
EEEHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA