| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608787
Identifier: 86608787
GI number: 86608787
Start: 1376080
End: 1376469
Strand: Reverse
Name: 86608787
Synonym: CYB_1312
Alternate gene names: NA
Gene position: 1376469-1376080 (Counterclockwise)
Preceding gene: 86608788
Following gene: 86608783
Centisome position: 45.18
GC content: 65.13
Gene sequence:
>390_bases ATGGGCAGTAGAGGCACTCGAAAATTGTACGGCCTGTTGCTTGCCGGCGGACTGGGCTTGCTGGGATGCGGGGATCCGAA TGTACCTCTGACCCAACCGCCCCCCGATGCTTTTCGGGTTAGCACCCCACGGCCACCGCGCCTAGATCTGTACCCCACCC CACCACCCACGCCAACTCCTACGCCGACACCACCCCCCAGCTTGCTGGAGCTCACGGCCCGTTGGTTGGGGATCCCTTGG CCGCCCCAAGAGACCAGCCTGGTGAGATTGAGCGCCCGTTTCCTGGAGATCCCACTACCCCCGAAGCCGCGCCGCTCCGC CAGCCCCTCGCCTCAGCCTTCCCCCAGCCCAGAGAGTGAGGAGAGAAGGCAACAAGGCCGCGAAACCTAG
Upstream 100 bases:
>100_bases TTGGCTCGCCAGCTATCTGTGCTGGAGGAAGATTTGCAAGCCCAGCTCAGAGCCTTGGGATCCCGATGATACCCTGTTGG AGGTGTCCAGCAGCGTATTC
Downstream 100 bases:
>100_bases TCCGCACCGCTGGCCTCTGGGGATTTAGGCGCCTACGGTCACCGGCTCCGTTTCTCGAACGCGCAGCTTTTCACAGGGGA TGGTATCCGCCAGAATAGAG
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 129; Mature: 128
Protein sequence:
>129_residues MGSRGTRKLYGLLLAGGLGLLGCGDPNVPLTQPPPDAFRVSTPRPPRLDLYPTPPPTPTPTPTPPPSLLELTARWLGIPW PPQETSLVRLSARFLEIPLPPKPRRSASPSPQPSPSPESEERRQQGRET
Sequences:
>Translated_129_residues MGSRGTRKLYGLLLAGGLGLLGCGDPNVPLTQPPPDAFRVSTPRPPRLDLYPTPPPTPTPTPTPPPSLLELTARWLGIPW PPQETSLVRLSARFLEIPLPPKPRRSASPSPQPSPSPESEERRQQGRET >Mature_128_residues GSRGTRKLYGLLLAGGLGLLGCGDPNVPLTQPPPDAFRVSTPRPPRLDLYPTPPPTPTPTPTPPPSLLELTARWLGIPWP PQETSLVRLSARFLEIPLPPKPRRSASPSPQPSPSPESEERRQQGRET
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14006; Mature: 13875
Theoretical pI: Translated: 10.84; Mature: 10.84
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSRGTRKLYGLLLAGGLGLLGCGDPNVPLTQPPPDAFRVSTPRPPRLDLYPTPPPTPTP CCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCC TPTPPPSLLELTARWLGIPWPPQETSLVRLSARFLEIPLPPKPRRSASPSPQPSPSPESE CCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEHHHEECCCCCCCCCCCCCCCCCCCCCCHH ERRQQGRET HHHHCCCCC >Mature Secondary Structure GSRGTRKLYGLLLAGGLGLLGCGDPNVPLTQPPPDAFRVSTPRPPRLDLYPTPPPTPTP CCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCC TPTPPPSLLELTARWLGIPWPPQETSLVRLSARFLEIPLPPKPRRSASPSPQPSPSPESE CCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEHHHEECCCCCCCCCCCCCCCCCCCCCCHH ERRQQGRET HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA