| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
Click here to switch to the map view.
The map label for this gene is 86608788
Identifier: 86608788
GI number: 86608788
Start: 1376501
End: 1377226
Strand: Reverse
Name: 86608788
Synonym: CYB_1313
Alternate gene names: NA
Gene position: 1377226-1376501 (Counterclockwise)
Preceding gene: 86608789
Following gene: 86608787
Centisome position: 45.2
GC content: 57.44
Gene sequence:
>726_bases ATGATTAGTGTGGAACCGATCTCTGTGGACGAGTTTCGCCAGCTCATGGCCGCCGATCTGGACGCTTGCTGCGAGGCCTT TGATTTGCGGGCGGAGTACCTGCGTCTGCAGCAACAGCGGCTACGCTCCTGGGGCATGCTGGCCTTTGGTTTGATAGCAA TAGCCTTGGTCATCTTCTTGGGGATGCGGGATCCCGGCTCTTGGGTGCCCTATGCCGCGGCTGCCGGGATCCTACTGCTG CTCCTGTTGGGGATCCTGAGAGCCAACTTGCGCTTGGGAAAAAGCCTGCATCGCATCCGCCAGCGTTGGCAGGAAGCCCA CCTGCTCAACAGCACCCCTGAGATGATGAAGTTTGCCACCGATCTGGCCCGCAAAGTAAAAGACTACAACCACTGGGTCA ACGAGCTCCAACAATCCCTGCAGGGGGGGCAGCATTGGCGGGATTTTCGGCAACTCAGCGAGGCCGAGCAGAAGTACATC CAATCGCTGTTTTTACAAGTGCGGGCCCAACTGGTGATGGCCCTACAGGTGTGCCGAGCTTTGATCGAGGATCCACAAGC CTCTGTGGCTCAGTATCTCAACCAAATGGTTGCCCGGGATCAGCAACTGTTGGAGCAATTTACCGCCAAAAACCTGACCG CCAACCGCTACGTGACCTTGGCTCGCCAGCTATCTGTGCTGGAGGAAGATTTGCAAGCCCAGCTCAGAGCCTTGGGATCC CGATGA
Upstream 100 bases:
>100_bases CGCTGGAGCCTCTACAAGAAAGTACGGAAGCTGCCCGTGATTGGCAGGGCAGGTCTTGATGTCGTTTGGCCTCGATCCAC TTGCGTTAAGGGTGCCCTCG
Downstream 100 bases:
>100_bases TACCCTGTTGGAGGTGTCCAGCAGCGTATTCATGGGCAGTAGAGGCACTCGAAAATTGTACGGCCTGTTGCTTGCCGGCG GACTGGGCTTGCTGGGATGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 241; Mature: 241
Protein sequence:
>241_residues MISVEPISVDEFRQLMAADLDACCEAFDLRAEYLRLQQQRLRSWGMLAFGLIAIALVIFLGMRDPGSWVPYAAAAGILLL LLLGILRANLRLGKSLHRIRQRWQEAHLLNSTPEMMKFATDLARKVKDYNHWVNELQQSLQGGQHWRDFRQLSEAEQKYI QSLFLQVRAQLVMALQVCRALIEDPQASVAQYLNQMVARDQQLLEQFTAKNLTANRYVTLARQLSVLEEDLQAQLRALGS R
Sequences:
>Translated_241_residues MISVEPISVDEFRQLMAADLDACCEAFDLRAEYLRLQQQRLRSWGMLAFGLIAIALVIFLGMRDPGSWVPYAAAAGILLL LLLGILRANLRLGKSLHRIRQRWQEAHLLNSTPEMMKFATDLARKVKDYNHWVNELQQSLQGGQHWRDFRQLSEAEQKYI QSLFLQVRAQLVMALQVCRALIEDPQASVAQYLNQMVARDQQLLEQFTAKNLTANRYVTLARQLSVLEEDLQAQLRALGS R >Mature_241_residues MISVEPISVDEFRQLMAADLDACCEAFDLRAEYLRLQQQRLRSWGMLAFGLIAIALVIFLGMRDPGSWVPYAAAAGILLL LLLGILRANLRLGKSLHRIRQRWQEAHLLNSTPEMMKFATDLARKVKDYNHWVNELQQSLQGGQHWRDFRQLSEAEQKYI QSLFLQVRAQLVMALQVCRALIEDPQASVAQYLNQMVARDQQLLEQFTAKNLTANRYVTLARQLSVLEEDLQAQLRALGS R
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27666; Mature: 27666
Theoretical pI: Translated: 8.82; Mature: 8.82
Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISVEPISVDEFRQLMAADLDACCEAFDLRAEYLRLQQQRLRSWGMLAFGLIAIALVIFL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GMRDPGSWVPYAAAAGILLLLLLGILRANLRLGKSLHRIRQRWQEAHLLNSTPEMMKFAT HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH DLARKVKDYNHWVNELQQSLQGGQHWRDFRQLSEAEQKYIQSLFLQVRAQLVMALQVCRA HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIEDPQASVAQYLNQMVARDQQLLEQFTAKNLTANRYVTLARQLSVLEEDLQAQLRALGS HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC R C >Mature Secondary Structure MISVEPISVDEFRQLMAADLDACCEAFDLRAEYLRLQQQRLRSWGMLAFGLIAIALVIFL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GMRDPGSWVPYAAAAGILLLLLLGILRANLRLGKSLHRIRQRWQEAHLLNSTPEMMKFAT HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH DLARKVKDYNHWVNELQQSLQGGQHWRDFRQLSEAEQKYIQSLFLQVRAQLVMALQVCRA HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIEDPQASVAQYLNQMVARDQQLLEQFTAKNLTANRYVTLARQLSVLEEDLQAQLRALGS HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA