Click here to switch to the map view.

The map label for this gene is crtH [H]

Identifier: 86608773

GI number: 86608773

Start: 1359648

End: 1361204

Strand: Reverse

Name: crtH [H]

Synonym: CYB_1298

Alternate gene names: 86608773

Gene position: 1361204-1359648 (Counterclockwise)

Preceding gene: 86608775

Following gene: 86608772

Centisome position: 44.68

GC content: 61.14

Gene sequence:

>1557_bases
TTGACCTCAACTTTGCCTTCTCAGACCCTCTTGCAGGCTCTGTACACCCCTTCCCCTGCTTGGGATGCCATCGTCATCGG
TGCTGGGATCGGGGGATTGGTCGCGGCCAGCCAGTTGGCTGCCAAAGGATACCGTGTGCTGGTGCTGGAAAAATACCTCA
TTCCAGGGGGCAGTGCCGGCTACTTTGAGCGTCCGGATCCCTTAGGCAACGGGATCTACCGCTTTGACGTGGGCGCTTCC
ATGATCTTTGGATTGGGCACCCAAGGCACCACTAACTTGCTGACACGGGCTTTGGCAGCGGTGGGCCAGTCCATAGACTC
TATCCCCGATCCGGTGCAGATTGCCTACCACCTGCCCAAGGGGCTGAATCCCCGAGTACACCGGGATTACGAGCAGTTTT
TGCAGGAGCTATCCGGCTACTTTCCCCAGGAAGCCGCCGGCATTCGCCGGTTCTACGACAGCCTGTGGCCCATCTTCAAC
AGCCTCAACGCCATGGAGCTGCTCTCGTTGGAGGAGTGGGGCTATCTATTTCGTTCTTTTGTGGGCAATCCCCTCGGCTG
CCTGACCTTGGCGCGCTATTTGCCGGTGAATGTGGGCCAGGTGGCGCGGCGCTGTCTGCGGGATCCGGATTTGCTGCGCT
TTGTGGATATGGAGTGCTACTGCTGGTCGGTGGTGCCGGCGGATCGCACGCCCATCATCAATGCCGGGATGGTGTTTTGT
GACCGACACTACGGCGGTGTCAACTATCCCAAAGGGGGGGTGGGGCAGATCGCCCAAAAGCTGGCCCAGGGACTAGAGGC
CCATGGCGGGCAGATCCGCTACAAAGCACCCGTGCGGCGGATCCTGGAAGAAAGAGGTCGGGCGGTGGGCGTAGAGCTGG
CCAGCGGGGAAAAGCTCTTTGCCCGCACGATCATCTCCAATGCCACCCGCTGGGACACCTTTGAGCGCCTATGGCCGGGA
TCCCTGCCCAGGGCGGAGCGGCAGTGGCAAAAACGCTACCAGCAATCCCCTAGCTTTTTAAGCTTGCACCTGGGGGTGCG
GGCCGAGGCCCTGGCCGGCGAACGCTATTGTCACCACATTCTCCTGGAAGACTGGGATCAGATGGAGGCTGAGCAGGGCA
CCCTTTTTGTCTCCATCCCCACCCTGTTGGATCCCGACCTGGCTCCCCCGGGCCGCCACATTGTTCATGCCTTTACCCCC
AGTTGGATATCCACCTGGCAAGGGTTAAGCCCAAGCCAGTACCAGACCCAGAAACAGCAAGCCGCCGACCGCCTCATCCG
CCGCCTGGAGGCCCTTTGGCCCCAACTGGGATCCCACATTGAACTGAAGGAGATAGGCACCCCCCGCACCCACCGCCGCT
TTTTGAGCCGCAGCAACGGCACCTATGGGCCTATCCCCAGCCGGGATCCCTGGGGCTTGCTGGGCATGCCCTTCAATCGC
ACCGCCATCCCCAACCTGTATTGTGTGGGGGATAGCACCTTCCCCGGCCAAGGGCTCAATGCCGTTGCCTTCTCCGGCTT
TGCCTGCGCCCACCGAGTGGCAGCGGATTTGGTTTAG

Upstream 100 bases:

>100_bases
GGCAAACTCATTCCCAGGGGAGCTCAACTCATGGGGAAACCCTAGAACCTCTGGTACGGTAAAGATACTGATCTTGCGTT
TGAGTTTCCAGAGGGATCCC

Downstream 100 bases:

>100_bases
GTTGCCCTTATCCTTGCTACTCCCTTCTCCCTCTGGGAGAGGGGCAGGGGATGAGGGTTGAGCGGCGCAGAGGGTTTGGG
AGGCAGTTGATGGTCAATTC

Product: carotenoid isomerase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 518; Mature: 517

Protein sequence:

>518_residues
MTSTLPSQTLLQALYTPSPAWDAIVIGAGIGGLVAASQLAAKGYRVLVLEKYLIPGGSAGYFERPDPLGNGIYRFDVGAS
MIFGLGTQGTTNLLTRALAAVGQSIDSIPDPVQIAYHLPKGLNPRVHRDYEQFLQELSGYFPQEAAGIRRFYDSLWPIFN
SLNAMELLSLEEWGYLFRSFVGNPLGCLTLARYLPVNVGQVARRCLRDPDLLRFVDMECYCWSVVPADRTPIINAGMVFC
DRHYGGVNYPKGGVGQIAQKLAQGLEAHGGQIRYKAPVRRILEERGRAVGVELASGEKLFARTIISNATRWDTFERLWPG
SLPRAERQWQKRYQQSPSFLSLHLGVRAEALAGERYCHHILLEDWDQMEAEQGTLFVSIPTLLDPDLAPPGRHIVHAFTP
SWISTWQGLSPSQYQTQKQQAADRLIRRLEALWPQLGSHIELKEIGTPRTHRRFLSRSNGTYGPIPSRDPWGLLGMPFNR
TAIPNLYCVGDSTFPGQGLNAVAFSGFACAHRVAADLV

Sequences:

>Translated_518_residues
MTSTLPSQTLLQALYTPSPAWDAIVIGAGIGGLVAASQLAAKGYRVLVLEKYLIPGGSAGYFERPDPLGNGIYRFDVGAS
MIFGLGTQGTTNLLTRALAAVGQSIDSIPDPVQIAYHLPKGLNPRVHRDYEQFLQELSGYFPQEAAGIRRFYDSLWPIFN
SLNAMELLSLEEWGYLFRSFVGNPLGCLTLARYLPVNVGQVARRCLRDPDLLRFVDMECYCWSVVPADRTPIINAGMVFC
DRHYGGVNYPKGGVGQIAQKLAQGLEAHGGQIRYKAPVRRILEERGRAVGVELASGEKLFARTIISNATRWDTFERLWPG
SLPRAERQWQKRYQQSPSFLSLHLGVRAEALAGERYCHHILLEDWDQMEAEQGTLFVSIPTLLDPDLAPPGRHIVHAFTP
SWISTWQGLSPSQYQTQKQQAADRLIRRLEALWPQLGSHIELKEIGTPRTHRRFLSRSNGTYGPIPSRDPWGLLGMPFNR
TAIPNLYCVGDSTFPGQGLNAVAFSGFACAHRVAADLV
>Mature_517_residues
TSTLPSQTLLQALYTPSPAWDAIVIGAGIGGLVAASQLAAKGYRVLVLEKYLIPGGSAGYFERPDPLGNGIYRFDVGASM
IFGLGTQGTTNLLTRALAAVGQSIDSIPDPVQIAYHLPKGLNPRVHRDYEQFLQELSGYFPQEAAGIRRFYDSLWPIFNS
LNAMELLSLEEWGYLFRSFVGNPLGCLTLARYLPVNVGQVARRCLRDPDLLRFVDMECYCWSVVPADRTPIINAGMVFCD
RHYGGVNYPKGGVGQIAQKLAQGLEAHGGQIRYKAPVRRILEERGRAVGVELASGEKLFARTIISNATRWDTFERLWPGS
LPRAERQWQKRYQQSPSFLSLHLGVRAEALAGERYCHHILLEDWDQMEAEQGTLFVSIPTLLDPDLAPPGRHIVHAFTPS
WISTWQGLSPSQYQTQKQQAADRLIRRLEALWPQLGSHIELKEIGTPRTHRRFLSRSNGTYGPIPSRDPWGLLGMPFNRT
AIPNLYCVGDSTFPGQGLNAVAFSGFACAHRVAADLV

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 57490; Mature: 57359

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTLPSQTLLQALYTPSPAWDAIVIGAGIGGLVAASQLAAKGYRVLVLEKYLIPGGSAG
CCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC
YFERPDPLGNGIYRFDVGASMIFGLGTQGTTNLLTRALAAVGQSIDSIPDPVQIAYHLPK
CCCCCCCCCCCEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHEECCC
GLNPRVHRDYEQFLQELSGYFPQEAAGIRRFYDSLWPIFNSLNAMELLSLEEWGYLFRSF
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VGNPLGCLTLARYLPVNVGQVARRCLRDPDLLRFVDMECYCWSVVPADRTPIINAGMVFC
HCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHCCCCEEEEEECCCCCCCEEECCEEEE
DRHYGGVNYPKGGVGQIAQKLAQGLEAHGGQIRYKAPVRRILEERGRAVGVELASGEKLF
ECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCEEEEEECCCCHHH
ARTIISNATRWDTFERLWPGSLPRAERQWQKRYQQSPSFLSLHLGVRAEALAGERYCHHI
HHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH
LLEDWDQMEAEQGTLFVSIPTLLDPDLAPPGRHIVHAFTPSWISTWQGLSPSQYQTQKQQ
HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCHHHHHHCCCCCHHHHHHHHH
AADRLIRRLEALWPQLGSHIELKEIGTPRTHRRFLSRSNGTYGPIPSRDPWGLLGMPFNR
HHHHHHHHHHHHHHHHCCCEEHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCC
TAIPNLYCVGDSTFPGQGLNAVAFSGFACAHRVAADLV
CCCCEEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure 
TSTLPSQTLLQALYTPSPAWDAIVIGAGIGGLVAASQLAAKGYRVLVLEKYLIPGGSAG
CCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCC
YFERPDPLGNGIYRFDVGASMIFGLGTQGTTNLLTRALAAVGQSIDSIPDPVQIAYHLPK
CCCCCCCCCCCEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHEECCC
GLNPRVHRDYEQFLQELSGYFPQEAAGIRRFYDSLWPIFNSLNAMELLSLEEWGYLFRSF
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VGNPLGCLTLARYLPVNVGQVARRCLRDPDLLRFVDMECYCWSVVPADRTPIINAGMVFC
HCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHCCCCEEEEEECCCCCCCEEECCEEEE
DRHYGGVNYPKGGVGQIAQKLAQGLEAHGGQIRYKAPVRRILEERGRAVGVELASGEKLF
ECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCEEEEEECCCCHHH
ARTIISNATRWDTFERLWPGSLPRAERQWQKRYQQSPSFLSLHLGVRAEALAGERYCHHI
HHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH
LLEDWDQMEAEQGTLFVSIPTLLDPDLAPPGRHIVHAFTPSWISTWQGLSPSQYQTQKQQ
HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCHHHHHHCCCCCHHHHHHHHH
AADRLIRRLEALWPQLGSHIELKEIGTPRTHRRFLSRSNGTYGPIPSRDPWGLLGMPFNR
HHHHHHHHHHHHHHHHCCCEEHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCC
TAIPNLYCVGDSTFPGQGLNAVAFSGFACAHRVAADLV
CCCCEEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7592436 [H]