Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 86608772

GI number: 86608772

Start: 1358130

End: 1359347

Strand: Reverse

Name: ydcM [C]

Synonym: CYB_1297

Alternate gene names: 86608772

Gene position: 1359347-1358130 (Counterclockwise)

Preceding gene: 86608773

Following gene: 86608771

Centisome position: 44.62

GC content: 54.93

Gene sequence:

>1218_bases
ATGAGCCAAGTCCTGACCATATCCTGCAAGCTCAAGGTGTCCCCGTCGCAAGCCGCCAAATTGGACGCGACTTTGGAGGC
TTTTGGCCAAGCCTTGAATTGGGTCAACCAGAACACGCCGGAGAAGATCGTCAACGCGGTCAAGCTGCAATCCCTTTGCT
ACTACGAGATTCGAGCCCGGTTTGGCTTGTCCAGTAACTTGGCAAGGACTACGTCCCGCTTACGCGACCAACAGGTGTGC
AGACGGGTAGCGGGTTCCCGCAAAGTGGCTAAGCAGAAAAAGCGTCCCGTCAAGGAGTTTGAGAGCGGCTTTGTTACCTA
CGACGCTCGCATCTTTTCGTTCCGTCAAAAAGACTGGACGGTGTCGCTGACCACGGTGGAAGGGAGAGAACGCTTTGAAC
TGGCCATTGGCAACTACCAGCGTGGGATGCTGGCTGGTTCCAACCCCAAATCTGCCACCCTGGTCAAGCGCAAAGATGGC
TCCTACTACATCCAGATTTGCGTAGAGAAAAAACCACCCAAGCAACAAGATACCGACAAGGTGATCGGGGTGGATTTGGG
AAGGATAGATATCGCTCATACCTCAGAGGGGAAGAACTGGAATGGACAGCAGTTAAACAAGGTACGAGACCACTACTCCC
GGTTGAGGGCGGTACTCCAACGCAAAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCCGTCAACTGCTGCAACGG
CTGTCTGGCAAGGAGAGGCGCTTTCAGGCGTGGGTCAATCATCGAATCTCCAAAGCTATTGTCTCTAGGGCAAAGACCAC
AAACAGCGCTATTGCCCTGGAAGACCTGACAGGGATCCGGGAAAGGGTCAATCAACAGCCGCGCAACAAGGCCGAACGGC
GCAGAACCAACAGTTGGGCGTTCTACCAGCTACGCCAGTTTCTGGAATACAAGGCGAGAGTTGCAGGGGTTTCTCTGGTT
CTTGTGCCGCCTGCCTACACGTCGCAGACCTGTCACAAGTGTTTACACATCCATCCCGATCCTGCGCAATCCTACCGCAG
TGGTAAGTCGTTCAAGTGTGGGCACTGTGGATGGGAAGGAGATGCGGACTTGAATGGTGCAAACGTAATTGCGCTCTTGG
GGGCTGCCGTAAACCAGCCTAGAGGTTCGGGCCTGTTTTGTTCTCTGGTAGAGCAGAGCAGGCTCAGGGCTACTGAAAGC
CCGCTCCGTACCGCTTAG

Upstream 100 bases:

>100_bases
TCTTCAAACTCGGTATTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCACTGCCGGGAGGAATGCGCTT
TGATGAAGTACAATGAACTT

Downstream 100 bases:

>100_bases
CGGTCGGAGCCGGGTAGTTTACTATCTCTCCAGCCACCCCTCAAATCCTTATTGGCTATAGTTGCGGCTGTCCGGAAGTG
ATAGCAGCAGACTTGCTGGA

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLARTTSRLRDQQVC
RRVAGSRKVAKQKKRPVKEFESGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDG
SYYIQICVEKKPPKQQDTDKVIGVDLGRIDIAHTSEGKNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQR
LSGKERRFQAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRNKAERRRTNSWAFYQLRQFLEYKARVAGVSLV
LVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSGLFCSLVEQSRLRATES
PLRTA

Sequences:

>Translated_405_residues
MSQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLARTTSRLRDQQVC
RRVAGSRKVAKQKKRPVKEFESGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDG
SYYIQICVEKKPPKQQDTDKVIGVDLGRIDIAHTSEGKNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQR
LSGKERRFQAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRNKAERRRTNSWAFYQLRQFLEYKARVAGVSLV
LVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSGLFCSLVEQSRLRATES
PLRTA
>Mature_404_residues
SQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLARTTSRLRDQQVCR
RVAGSRKVAKQKKRPVKEFESGFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGS
YYIQICVEKKPPKQQDTDKVIGVDLGRIDIAHTSEGKNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQRL
SGKERRFQAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRNKAERRRTNSWAFYQLRQFLEYKARVAGVSLVL
VPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSGLFCSLVEQSRLRATESP
LRTA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=232, Percent_Identity=28.448275862069, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45768; Mature: 45637

Theoretical pI: Translated: 11.03; Mature: 11.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLARTTSRLRDQQVCRRVAGSRKVAKQKKRPVKEFESGFVTYDARIFSFRQKDWT
CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHCCCEEEEHHEEEEECCCEE
VSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICVEKKPPKQQDTDK
EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCC
VIGVDLGRIDIAHTSEGKNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQR
EEEEEECEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LSGKERRFQAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRNKAERRRTNSWA
HCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKARVAGVSLVLVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCC
DADLNGANVIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTA
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SQVLTISCKLKVSPSQAAKLDATLEAFGQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLARTTSRLRDQQVCRRVAGSRKVAKQKKRPVKEFESGFVTYDARIFSFRQKDWT
CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHCCCEEEEHHEEEEECCCEE
VSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICVEKKPPKQQDTDK
EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCC
VIGVDLGRIDIAHTSEGKNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQR
EEEEEECEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LSGKERRFQAWVNHRISKAIVSRAKTTNSAIALEDLTGIRERVNQQPRNKAERRRTNSWA
HCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKARVAGVSLVLVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCC
DADLNGANVIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTA
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]