Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 86608702

GI number: 86608702

Start: 1267757

End: 1268992

Strand: Direct

Name: ydcM [C]

Synonym: CYB_1227

Alternate gene names: 86608702

Gene position: 1267757-1268992 (Clockwise)

Preceding gene: 86608700

Following gene: 86608704

Centisome position: 41.61

GC content: 57.93

Gene sequence:

>1236_bases
ATGACCCAAGTCCTGACCGTATCCTGCAAGCTCAAGGCGTCCCAGTCGCAAGCCGCCAAATTGGACGCGACTTTGGAGGC
TTTTGGCCAAGCCTTGAACTGGGTCAACCAAAACACACCCGAGAAAGTCGCCAACGCCGTTAAGCTCCAGTCTCTGTGCT
ACCGCGAAATCCGTGCCCGGTTCGGCTTGTCCAGTAACTTGGCAAGGACTACGTCCCGCTTACGCGACCAGCAGGTCTGC
AGACGGCTGGCCGGCGCCCGTAAAGTTGCCCAACAGAAAAACCGCCCCGTCAAAGCGTTCAAAGGGGGCTTCGCTACCTA
CGACGCTCGTATCTTTTCGTTCCGCGAGAAAGACTGGACGGTGTCGCTGACCACGGTGGAGGGTCGGGAGCGCTTTGAGC
TGGCGATTGGCCGCTACCAGAGAGAACGGCTGGCGGGCTCCAATCCCAAATCGGCCACTCTGGTCAAGCGTAAAGACGGC
TCCTACTCCATTCAAATCTGTGTAGAAGCGGAGCCATCCCCACCGCAACGCACGGGCAGAGTGCTGGGGGTGGACTTGGG
AAGGACAGATATTGCCCATACGTCAGAGGGGGATAACTGGAATGGACAGCAGTTGAACAGAGTCCGAGACCACTACTCCC
GGTTGAGGGCGGCACTCCAACGCAAAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCAGAGAACTGTTGCAACGG
CTGTCTGGCAAGGAGAGACGTTTTCAGGCGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAAGCTAC
CAACAGCGCTATCGCCCTGGAAGACCTGACAGGGATCCGGAAAAGAGTCAATCAACAGCCGCGCAGCAAAGCCGAGCGGC
GCAGGGCCAACAGTTGGGCGTTCTACCAACTACGCCAGTTTCTGGAATACAAGGCGAGGGTTGCAGGGGTTTCTCTGATT
CCTGTGCCGCCTGCTTACACGTCGCAGACCTGTCACCGGTGCTTACACATCCACCCTGAGCAGGGCAAGTCCTACCGCAG
TGGCAAGTCGTTCAAGTGTGGGCACTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTCTTGG
GGGCTGTCGTAAACCAGCCTAGAGGTTCGGGCCTGTTTTGTTCTCTGGTAGGGCAGAGCAGGCTCAGGGCTACTGAAAGC
CCGCTCCGTACCGCTTTAGCGGTCGGAGTCGGGTAG

Upstream 100 bases:

>100_bases
GCCGATCGAAGGCGATGATACTCTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGCCGAGAGGAA
TGCGAGGTTACAATAGAACC

Downstream 100 bases:

>100_bases
TTTACCACTCACCTCTGCTTCTGAATCGTTGCGCAAACAGAATTGCACCACCTGCGAGGTTTGGTCGTCGATGGGGGTAG
CCGCTGTGAAAATGATGTGG

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MTQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLARTTSRLRDQQVC
RRLAGARKVAQQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDG
SYSIQICVEAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRELLQR
LSGKERRFQAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARVAGVSLI
PVPPAYTSQTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVGQSRLRATES
PLRTALAVGVG

Sequences:

>Translated_411_residues
MTQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLARTTSRLRDQQVC
RRLAGARKVAQQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDG
SYSIQICVEAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRELLQR
LSGKERRFQAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARVAGVSLI
PVPPAYTSQTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVGQSRLRATES
PLRTALAVGVG
>Mature_410_residues
TQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLARTTSRLRDQQVCR
RLAGARKVAQQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGS
YSIQICVEAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRELLQRL
SGKERRFQAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARVAGVSLIP
VPPAYTSQTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSGLFCSLVGQSRLRATESP
LRTALAVGVG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=259, Percent_Identity=28.1853281853282, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45933; Mature: 45802

Theoretical pI: Translated: 11.43; Mature: 11.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRAR
CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLARTTSRLRDQQVCRRLAGARKVAQQKNRPVKAFKGGFATYDARIFSFREKDWT
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHEEEECCCEE
VSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGR
EEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCC
VLGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRELLQR
EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LSGKERRFQAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWA
HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKARVAGVSLIPVPPAYTSQTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
DADLNGANVIALLGAVVNQPRGSGLFCSLVGQSRLRATESPLRTALAVGVG
CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRAR
CCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLARTTSRLRDQQVCRRLAGARKVAQQKNRPVKAFKGGFATYDARIFSFREKDWT
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHEEEECCCEE
VSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGR
EEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCC
VLGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRELLQR
EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LSGKERRFQAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWA
HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKARVAGVSLIPVPPAYTSQTCHRCLHIHPEQGKSYRSGKSFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
DADLNGANVIALLGAVVNQPRGSGLFCSLVGQSRLRATESPLRTALAVGVG
CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]